View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_high_6 (Length: 400)
Name: NF8590_high_6
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 385
Target Start/End: Original strand, 28940243 - 28940598
Alignment:
| Q |
30 |
ggaattcagtgagtgcgacatatatgagcaacaaatttagatggaaaagcacataagaatttctatatggcagagttggtctgtgatctcagtgaccaaa |
129 |
Q |
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| T |
28940243 |
ggaattcagtgagtgtgtcatatatgagaaacaaatttagctggaaaagcacataagaatttctatatggcagagttggtctgtgatctcagtgaccaaa |
28940342 |
T |
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| Q |
130 |
ggtaaacaatgagataagagaaggatattgtagatctatgatcagtaagatggaaagagatttttattgtaaacaacaacaacatagtctgacattgttt |
229 |
Q |
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| T |
28940343 |
ggtaaacaatgagataagagaaggatattgtagatctatgatcagtaagatgaaaagagatttttattttaaacaacaacaacatagtctgacattgttt |
28940442 |
T |
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| Q |
230 |
ctcttgtccttttttaaatgtcccttgtaattaatagctttaattttgtgagtttgtgtttctaataagtcttcaatttaatggttgaggtttttgagta |
329 |
Q |
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| T |
28940443 |
ctcttgtccttttttaaatgtcccttgtaattaatagctttaattttgtgagtttgtgtttctaataagtcttcaatttaatggttgaggtttttgagta |
28940542 |
T |
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| Q |
330 |
acatcaccctttttaagcaataatcttgaggttttaggcaactttgatgttgggag |
385 |
Q |
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| T |
28940543 |
acatcaccctttttaagcaataatcttgaggttttaggcaactttgatgttgggag |
28940598 |
T |
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