View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_high_8 (Length: 379)
Name: NF8590_high_8
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 183 - 370
Target Start/End: Original strand, 5270860 - 5271046
Alignment:
| Q |
183 |
tgcaaatagatcatggatatgttaagacacctagaattttaaaactctaaagaatctataatatctttgtttaagggatnnnnnnnnnttcagatgctca |
282 |
Q |
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| T |
5270860 |
tgcaaatagatcatggatatgttaagacacctagaattttacaactctaaagaatctataataactttgtttaagggataaaaaaaaat-cagatgctca |
5270958 |
T |
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| Q |
283 |
ctcatgttcccaatctatggcctatatatcataataaaacattgtatttcacacgcttactgacttctgtctgccactgatgtccatc |
370 |
Q |
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| T |
5270959 |
cttatgttcccaatctatggcctatatatcataataaaacattgtatttcacacgcttactgacttctgtctgccactgatggccatc |
5271046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 5270813 - 5270860
Alignment:
| Q |
115 |
gaaagtacaacttaccttaaa-gagaatacaagtggtaatgacctatt |
161 |
Q |
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| T |
5270813 |
gaaattacaacttatcttaaaagagaatacaagtggtaatgacctatt |
5270860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 5270770 - 5270814
Alignment:
| Q |
20 |
ttacctcacgaccgaacttcaaattactagagtccatttctccga |
64 |
Q |
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| T |
5270770 |
ttacctcatgcccgaactccaaattactagaatccatttctccga |
5270814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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