View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_high_9 (Length: 369)
Name: NF8590_high_9
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 44292170 - 44291826
Alignment:
| Q |
7 |
tagataattcttacaaaaaccaacaacaggagggtcataaattcaagagatactaacaacgaacacgacattaaaagtttgaaaaactgaattaattcaa |
106 |
Q |
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| T |
44292170 |
tagacaattcttacaaaaaccaacaacaggagggtcataaattcaagagatactaacaacgaacacgacattaaaagtttgaaaaactgaattaattcaa |
44292071 |
T |
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| Q |
107 |
tgtagcacgccgacacttcaatggaaggcgacacatgtgattactttcaatcaaatcattttttcaaatttttatttgtaccgttgccaatgtgtctgtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44292070 |
tgtagcacgccgacacttcaatggaaggcgacacatgtgattactttcaatcaaatcattttttcaaatttttatttgtaccgttgccaatgtgtctgtg |
44291971 |
T |
|
| Q |
207 |
tcagtgtcgtgaccgtattttgtagatcataaattcacaataatcataaaatcgcatcatatcacaatgtaagtgatgaaaaggagaaaaacggaatcat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44291970 |
tcagtgtcgtgaccgtattttgtagatcataaattcacaataatcataaaatcgcatcatatcacaatgtaagtgatgaaaaggagaaaaacggaatcat |
44291871 |
T |
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| Q |
307 |
acagataatgacgaaggatcttatgatggaaacaagaggaatatc |
351 |
Q |
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| T |
44291870 |
acagataatgacgaaggatcttatgatggaaacaagaggaatatc |
44291826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 23423219 - 23423263
Alignment:
| Q |
136 |
gacacatgtgattactttcaatcaaatcattttttcaaattttta |
180 |
Q |
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| T |
23423219 |
gacacatgtgattactttcaattaaatcatttattcaaattttta |
23423263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 14782856 - 14782897
Alignment:
| Q |
139 |
acatgtgattactttcaatcaaatcattttttcaaattttta |
180 |
Q |
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| T |
14782856 |
acatgtgattacgttcaattaattcattttttcaaattttta |
14782897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 24362370 - 24362326
Alignment:
| Q |
141 |
atgtgattactttcaatcaaatcattttttcaaatttttatttgt |
185 |
Q |
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| T |
24362370 |
atgtgattacattcaattaattcattttttcaaatttttacttgt |
24362326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 10764083 - 10764127
Alignment:
| Q |
136 |
gacacatgtgattactttcaatcaaatcattttttcaaattttta |
180 |
Q |
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|||||||| |||||| |||||| || ||||||||||||||||||| |
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| T |
10764083 |
gacacatgcgattacgttcaattaattcattttttcaaattttta |
10764127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 9656775 - 9656811
Alignment:
| Q |
140 |
catgtgattactttcaatcaaatcattttttcaaatt |
176 |
Q |
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||||||||||| |||||| |||||||||||||||||| |
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| T |
9656775 |
catgtgattacattcaattaaatcattttttcaaatt |
9656811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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