View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_1 (Length: 623)
Name: NF8590_low_1
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 608
Target Start/End: Complemental strand, 10576553 - 10575962
Alignment:
| Q |
17 |
acatcaaagggtccccagaggctaactaactctcaattgagaggctttgtgacttgaattgggtgcatatatgaggatgcatgaattgtgacaagaactc |
116 |
Q |
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| T |
10576553 |
acatcaaagggtccc-agaggctaactaactctcaattgagaggctttgtgacttgaattgggtgcatatatgaggatgcatgaattgtgacaagaactc |
10576455 |
T |
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| Q |
117 |
ttttctcctctcctctgttattccttttccttcaaaattttgaacattctgcaccttttgcgcattttgtacactaagatcttctgttattcctttggtg |
216 |
Q |
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| T |
10576454 |
ttttctcctctcctctgttattccttttccttcaaaattctgaacattctgcaccttttgcgcattttgtacactaagatcttctgttattcctttggtg |
10576355 |
T |
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| Q |
217 |
ctttcattttgtcataagaggttgaacattggtggnnnnnnn-ctcgccggaatatggaagcagaggctgtagaagtggaagtctttgaactgaagcaag |
315 |
Q |
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| T |
10576354 |
ctttcattttgtcagaagaggttgaacattggtggaaaaaaaactcgccggaatatggaagcagaggctgtagaagtggaagtctttgaactgaagcaag |
10576255 |
T |
|
| Q |
316 |
ggaatacgttcgtagctgacaatgcagtcaaatttgagaaatagtctatgttctgtcccactataatggtgcatatgcaattcattggccaccaggagat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10576254 |
ggaatacgttcgtagctgacaatgcagtcaaatttgagaaatagtctatgttctgtcccactataatggtgtatatgcaattcattggccaccaggagat |
10576155 |
T |
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| Q |
416 |
gctaatgtttttctatccttgtgaataaatgcaaaatttatgatgaagatagcatggcaagagctacccactataaaaatgtgggtcttcgttaggacaa |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || |||||| |
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| T |
10576154 |
gctaatgtttttctatccttgtgaataaatgcaaaatttatgatgaagatagcatggcaagagctactcactataagaatgtgggtcttctttgggacaa |
10576055 |
T |
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| Q |
516 |
gacgttctgattaacataatttatggtgattatgttaatcacagatgcaatattcaacacagaacttaatagcttacaatagttcatgatgtc |
608 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
10576054 |
gaagttctgattaacataatttatggtgattatgttaatcacagatgcaatattgaacacagaacttaatagcgtacaatagttcatgatgtc |
10575962 |
T |
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