View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_12 (Length: 360)
Name: NF8590_low_12
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 37919190 - 37919538
Alignment:
| Q |
1 |
gagaaaatcactccacaattttctatgatcgtgtgtgattcactttcgtgcattatactatttcaagctgcactgtatcgcgatttttgacaaaatgaaa |
100 |
Q |
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| T |
37919190 |
gagaaaatcactccacaattttctatgatcgtgtgtgattcactttcgtacattatactatttcaagctgcactgtatcgcgatttttgacaaaatgaaa |
37919289 |
T |
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| Q |
101 |
cagagaaatcagttgagttaatcgttggatccagaagcttcatcatcaaatcttgagccaatttcaaaattttccatttctaccaccttttgaaacaaat |
200 |
Q |
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| T |
37919290 |
cagagaaatcagttgagttaatcgttggatccagaagcttcatcatcaaatcttgagccaatttcaatattttccatttctaccaccttttgaaacaaat |
37919389 |
T |
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| Q |
201 |
ttgttaatccttccaccgcaattataggaatgggactgagaggatatccttatctcaatcatttgcctactatgaatttcgatgttggacttccatttac |
300 |
Q |
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| T |
37919390 |
ttgttaatccttccaccgcaattataggaatgggactgagaggatatccttatctcaatcatttgcctactatgaatttcgatgttggacttccatttac |
37919489 |
T |
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| Q |
301 |
cggaattaacattgtactgtggtttaaatctaggctacatcctgatgat |
349 |
Q |
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| T |
37919490 |
cggaattaacattgtactgtggtttaaatctaggctacatcctgttgat |
37919538 |
T |
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