View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_15 (Length: 352)
Name: NF8590_low_15
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 27783166 - 27783500
Alignment:
| Q |
1 |
cttgagcgaaatgtaagttcattatgagagaacatacccactccacgtgcccctcttgctccatactcatgtaaattgagattctgttacctactattcc |
100 |
Q |
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| T |
27783166 |
cttgagcgaaatgtaagttcattatgagagaacatacccactccacgtacccctcttcctccatactcatgtaaactgagattctgttacctactatttc |
27783265 |
T |
|
| Q |
101 |
cttgcaggtggataaattacaggaacaattgctaatggagaagagcttgagggcaactcttgaagcaggacttgagtttcctccagggacttcatctgag |
200 |
Q |
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| T |
27783266 |
cttgcaggtggataaattacaggaacaattgctaaaggagaagagcttcagggcaactcttgaagcaggacttgagattcatccagggacttcgtctgag |
27783365 |
T |
|
| Q |
201 |
ttatctggtattgatgaaaaggttagtctatctcattcatata-ttgtttatttgttttcataatgcaacaacttcttaatcttcatactttccacagac |
299 |
Q |
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| T |
27783366 |
ttatcgggtattgatgaaaaggttagtctatctcattcatatatttgtttatttgttctcataatgcaacaacttcttaatctgcatactttctacagac |
27783465 |
T |
|
| Q |
300 |
caagacaaatgttgaggaaatagtgctgatagaag |
334 |
Q |
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| T |
27783466 |
caaggcagatgttgaggaaatagtgctgatagaag |
27783500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 329
Target Start/End: Complemental strand, 17179850 - 17179748
Alignment:
| Q |
230 |
atctcattcatatattgttt---atttgttttcataatgcaacaacttcttaatcttcatactttccacagaccaagacaaatgttgaggaaatagtgct |
326 |
Q |
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| T |
17179850 |
atctcattcatatattgtttttaatctattttcaaaatacaacaaattcttaatttacatactttccacagaccaagactgattttgaggaaatagtgct |
17179751 |
T |
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| Q |
327 |
gat |
329 |
Q |
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| T |
17179750 |
gat |
17179748 |
T |
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