View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_16 (Length: 352)
Name: NF8590_low_16
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 2829133 - 2829457
Alignment:
| Q |
17 |
catcaatccgaccacctctacaccattccaccatagcaccgctatagcgtgctaatgacaacataaatgccaagaagaaatattttgtaacctaaagagc |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829133 |
catcaatccgaccacctctatgccattccaccatagcaccgctatagcgcgctaatgacaacataaatgccaagaagaaatattttgtaacctaaagagc |
2829232 |
T |
|
| Q |
117 |
ctttgaaccaggaatgtcaatccaatgcaattgaatctccacttccccacattcaacatttcttaatctaagaaccaagttttggacaactttaccattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2829233 |
ctttgaaccaggaatgtcaatccaatgcaattgaatctccacttccccacattcaacatttcttaatctaagaaccaacttttggacaactttaccattt |
2829332 |
T |
|
| Q |
217 |
ttcaaaacaatgtgactctctcctgctaaacaattttgtctgctaggttgcacccttgtaattatagtatcatttgggagaccttgcaaccgcatcttta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829333 |
ttcaaaacaatgtgactctctcctgctaaacaattttgtctgctaggttgcacccttgtaattatagtatcatttgggagaccttgcaaccgcatcttta |
2829432 |
T |
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| Q |
317 |
ctgcttccacaaatggactgatgtc |
341 |
Q |
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| T |
2829433 |
ctgcttccacaaatggactgatgtc |
2829457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 97 - 341
Target Start/End: Original strand, 30182548 - 30182792
Alignment:
| Q |
97 |
tattttgtaacctaaagagcctttgaaccaggaatgtcaatccaatgcaattgaatctccacttccccacattcaacatttcttaatctaagaaccaagt |
196 |
Q |
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| T |
30182548 |
tatttggtaacctacataacctttgaaccaggaatgtcaacccagtgcaactggagttccacttccccacattcgacatttcttagtctaagaaccatgt |
30182647 |
T |
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| Q |
197 |
tttggacaactttaccatttttcaaaacaatgtgactctctcctgctaaacaattttgtctgctaggttgcacccttgtaattatagtatcatttgggag |
296 |
Q |
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| T |
30182648 |
tttggaaaattttaccatctttccaaacaatgtgactctcttctgctaagcaattttgtctgctaggttgcacccttgtaactatagcctcatttgggag |
30182747 |
T |
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| Q |
297 |
accttgcaaccgcatctttactgcttccacaaatggactgatgtc |
341 |
Q |
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| T |
30182748 |
acctgccaaccgcatcttcactgcttcaaaaaatgggccgatgtc |
30182792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 186 - 341
Target Start/End: Original strand, 30055138 - 30055293
Alignment:
| Q |
186 |
aagaaccaagttttggacaactttaccatttttcaaaacaatgtgactctctcctgctaaacaattttgtctgctaggttgcacccttgtaattatagta |
285 |
Q |
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||||| || |||||||| || |||||||| |||| ||||||||| ||||||| ||||||| || |||||||| |||||||||||||| |||| |||| |
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| T |
30055138 |
aagaatcatgttttggaaaattttaccatctttctaaacaatgtaactctcttctgctaagcagttttgtctactaggttgcaccctcgtaactataacc |
30055237 |
T |
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| Q |
286 |
tcatttgggagaccttgcaaccgcatctttactgcttccacaaatggactgatgtc |
341 |
Q |
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|| |||||||||||| ||||||||||||||||||||| | |||||| | |||||| |
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| T |
30055238 |
tcgtttgggagacctgtcaaccgcatctttactgcttcaaaaaatgggccgatgtc |
30055293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 30181204 - 30181292
Alignment:
| Q |
230 |
gactctctcctgctaaacaattttgtctgctaggttgcacccttgtaattatagtatcatttgggagaccttgcaaccgcatctttact |
318 |
Q |
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|||||||| ||||||| || ||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||||| |
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| T |
30181204 |
gactctcttctgctaagcagttttgtctgctaggttggacccttgtaaccatagtatcgtttgggagaccttccaaccgcatctttact |
30181292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 30129079 - 30129148
Alignment:
| Q |
154 |
tccacttccccacattcaacatttcttaatctaagaaccaagttttggacaactttaccat-ttttcaaa |
222 |
Q |
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||||||||| |||||||||||||||||| ||||||||||| |||||||| || |||||||| |||||||| |
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| T |
30129079 |
tccacttcctcacattcaacatttcttagtctaagaaccatgttttggaaaattttaccatcttttcaaa |
30129148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 45348613 - 45348535
Alignment:
| Q |
136 |
atccaatgcaattgaatctccacttccccacattcaacatttcttaatctaagaaccaagttttggacaactttaccat |
214 |
Q |
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||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| || | | |||||||||||| |||| |
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| T |
45348613 |
atccattgcaattgaatttccacttcaccacattcaacatttctcaatctaaggacaacatcttggacaactttgccat |
45348535 |
T |
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