View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_17 (Length: 349)
Name: NF8590_low_17
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 38626394 - 38626070
Alignment:
| Q |
18 |
ctattcaggttgttgttgattttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagattcttatgt |
117 |
Q |
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| T |
38626394 |
ctattcaggttgttgttgattttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagattcttatgt |
38626295 |
T |
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| Q |
118 |
agatgatgagcctcatgatccgtttgagtctcgcaccacactgcnnnnnnncagaggggggacacaccgtaaggatgtatgtatttatgttgatgagatt |
217 |
Q |
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| T |
38626294 |
agatgatgagcctcatgatccgtttgagtctcgcaccacactgctttttttcagaggggggacacaccgtaaggatgtatgtatttatgttgatgagatt |
38626195 |
T |
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| Q |
218 |
taattgaaggaataatgctgacctccttatacttacaggcaacttgatttttggggtgtgtcatgtttgcagaaaggcattgttcgtgctaaattcacaa |
317 |
Q |
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| T |
38626194 |
taattgaaggaataatgctgacttccttatacttacaggcaacttgatttttggggtgtgtcatgtttgcagaaaggcattgttcgtgctaaattcacaa |
38626095 |
T |
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| Q |
318 |
agatattagctggttttgatgatgt |
342 |
Q |
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| T |
38626094 |
agatattagctggttttgatgatgt |
38626070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 34622463 - 34622607
Alignment:
| Q |
17 |
actattcaggttgttgttgattttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagattcttatg |
116 |
Q |
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|||||||| |||||||| ||||||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| ||| | || ||||||||| |
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| T |
34622463 |
actattcaagttgttgtggattttggccgctaccctaagggcatgtctaatttgaataaagatgtggtgtccccgtatgttcatgttgtggattcttata |
34622562 |
T |
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| Q |
117 |
tagatgatgagcctcatgatccgtttgagtctcgcaccacactgc |
161 |
Q |
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| T |
34622563 |
cagatgatgaacctcaagatccgtacgagattcgctccacactgc |
34622607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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