View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_18 (Length: 338)
Name: NF8590_low_18
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 17776196 - 17776501
Alignment:
| Q |
14 |
agaccacaaattgagtacactcgtatcgttgttaaccaaatccaccgcacacatacgaaaggccatggacacggctaatgttatcaaacgccgagttaat |
113 |
Q |
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| T |
17776196 |
agaccacaaattgagtacactcgtatcgttattaaccaaatccaccgcacacattcgaaaggcaatggacacggctaatgtgatcaaacgccgagttaat |
17776295 |
T |
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| Q |
114 |
agccctagagaggaaattgctttgaatgactgtgaggaattaatggatttgtccatggatagagtgtgggactcggtgttgactctaaccaaaaataaca |
213 |
Q |
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| T |
17776296 |
agccctagagaggaaattgctttgaatgactgtgaggaattaatggatttgtccatggatagagtttgggactcagtgttgactctaaccaaaaataaca |
17776395 |
T |
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| Q |
214 |
ttgactcacagcatgatgcacacacatggctaagtagtgtgctcactaaccatgcaacttgcttggatggattagaaggtacatctcgggttgttatgga |
313 |
Q |
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| T |
17776396 |
ttgactcacagcatgatgcacacacatggctaagtagtgtgctcactaaccatgcaacttgtttggatggattagaaggttcatctcgggtcgttatgga |
17776495 |
T |
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| Q |
314 |
gagtga |
319 |
Q |
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|||||| |
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| T |
17776496 |
gagtga |
17776501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 17806888 - 17807187
Alignment:
| Q |
14 |
agaccacaaattgagtacactcgtatcgttgttaaccaaatccaccgcacacatacgaaaggccatggacacggctaatgttatcaaacgccgagttaat |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17806888 |
agaccacaaattgagtacactcatatcgttgttaaccaaatccaccacacacattcgaaaggccatggacacggctaatgttatcaaacgccgaattaac |
17806987 |
T |
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| Q |
114 |
agccctagagaggaaattgctttgaatgactgtgaggaattaatggatttgtccatggatagagtgtgggactcggtgttgactctaaccaaaaataaca |
213 |
Q |
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| T |
17806988 |
agccctagagaagaaaatgctttgaatgtctgtgaaaaactaatgaacttgtccatggaaagagtttgggactcagtgttaactctcacaaaagataata |
17807087 |
T |
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| Q |
214 |
ttgactcacagcatgatgcacacacatggctaagtagtgtgctcactaaccatgcaacttgcttggatggattagaaggtacatctcgggttgttatgga |
313 |
Q |
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| T |
17807088 |
tggactcacagcaagatgcacacacttggctaagtagtgtgctcacaaaccatgcaacttgtttggatggattagaaggtacgtctcgggctgttatgga |
17807187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 45 - 323
Target Start/End: Original strand, 17820694 - 17820972
Alignment:
| Q |
45 |
ttaaccaaatccaccgcacacatacgaaaggccatggacacggctaatgttatcaaacgccgagttaatagccctagagaggaaattgctttgaatgact |
144 |
Q |
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||||| || |||||| ||||||| | ||| || |||||||| || | |||||||||||||||| |||| ||||||||||| ||||||||||||| ||||| |
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| T |
17820694 |
ttaacaaagtccaccacacacattcaaaatgctatggacacagccagtgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgact |
17820793 |
T |
|
| Q |
145 |
gtgaggaattaatggatttgtccatggatagagtgtgggactcggtgttgactctaaccaaaaataacattgactcacagcatgatgcacacacatggct |
244 |
Q |
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|||| || ||||||| ||||||||| | ||| | |||||| || |||| | ||||| |||||||| |||||||||||||| |||||||| |||||||| |
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| T |
17820794 |
gtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaaaaaataatattgactcacagcaagatgcacatacatggct |
17820893 |
T |
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| Q |
245 |
aagtagtgtgctcactaaccatgcaacttgcttggatggattagaaggtacatctcgggttgttatggagagtgacctt |
323 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||||| |
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| T |
17820894 |
aagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctcgggtcgttatggaaaatgacctt |
17820972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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