View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8590_low_2 (Length: 513)
Name: NF8590_low_2
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_2 |
 | |
|
| [»] scaffold0894 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0716 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 48 - 498
Target Start/End: Complemental strand, 7314217 - 7313765
Alignment:
| Q |
48 |
ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7314217 |
ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat |
7314118 |
T |
|
| Q |
148 |
ttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatgagat |
247 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7314117 |
ttgatggcataattgttttatcctgttgtaagttccattatcaaatattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatgagat |
7314018 |
T |
|
| Q |
248 |
ctttaatttttgctatttgtattactatctactgttcca-ttgcactaccatatg--tttaaacctttctgctattcattaatgaaatttccaccacata |
344 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7314017 |
ctttaatttttgctatttgtgttactatctactgttccatttgcgctaccatatgtttttaaacctttctgctattcattaatgaaatttccaccacatg |
7313918 |
T |
|
| Q |
345 |
tttttaatctactttatattcattaatttaactaatagtattggaaagatttataacgttatatccaccttgttagtaatttattcatcatagtatgcac |
444 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
7313917 |
ttgttaatctactttatattcattaatttaactaatagtattggaaagatttataacgttatattcaccttgttagtaacttattcatcataatatgcac |
7313818 |
T |
|
| Q |
445 |
actactgaatgtatagtttttaatattgctgcttcttggttataataaagcttg |
498 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7313817 |
actcctgaatgtatag-ttttaatattgctgcttcttggttataataaagcttg |
7313765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 48 - 495
Target Start/End: Complemental strand, 11136736 - 11136287
Alignment:
| Q |
48 |
ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11136736 |
ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtgt |
11136637 |
T |
|
| Q |
148 |
ttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatgagat |
247 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11136636 |
ttgatggcgtaattgttttatcctgttgtaagttccattatcaaatattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatgagat |
11136537 |
T |
|
| Q |
248 |
ctttaatttttgctatttgtattactatctactgttccattgcactaccatatg--tttaaacctttctgctattcattaatgaaatttccaccacatat |
345 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11136536 |
ctttaatttttgctatttgtgttactatctattgttccattgcgctaccatatgtttttaaacctttctgctattcattaatgaaatttccaccacatgt |
11136437 |
T |
|
| Q |
346 |
ttttaatctactttatattcattaatttaactaatagtattggaaagatttataacgttatatccaccttgttagtaatttattcatcatagtatgcaca |
445 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
11136436 |
tgttaatctactttatattcattaatttaactaataatattggacagatttataacgttatattccccttgttagtaatttattcatcataatatgcaca |
11136337 |
T |
|
| Q |
446 |
ctactgaatgtatagtttttaatattgctgcttcttggttataataaagc |
495 |
Q |
| |
|
|| |||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11136336 |
ctcctgagtgtatagtttttaatattgttgcttcttggttataataaagc |
11136287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45633809 - 45633855
Alignment:
| Q |
1 |
gtgtagtaaagggtgtacaaaacaaagtggtcgatctatcatttctc |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45633809 |
gtgtagtaaagggtgtacaaaacaaagtggtcgatctatcatttctc |
45633855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 168 - 498
Target Start/End: Original strand, 1 - 331
Alignment:
| Q |
168 |
tcctgttgtaagttccattatcaaatattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatgagatctttaatttttgctatttgt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
tcctgttgtaagttccattatcaaatattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatgagatctttaatttttgctatttgt |
100 |
T |
|
| Q |
268 |
attactatctactgttccattgcactaccatatgtttaaacctttctgctattcattaatgaaatttccaccacatatttttaatctactttatattcat |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
101 |
gttactatctactgttccattgcactaccatatgtttaaacctttctgctattcattaatgaaatttccaccacatgtttttaatctactttatattcat |
200 |
T |
|
| Q |
368 |
taatttaactaatagtattggaaagatttataacgttatatccaccttgttagtaatttattcatcatagtatgcacactactgaatgtatagtttttaa |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
201 |
taatttaactaatagtattggaaagatttataacgttatatccaccttgttagtaatttattcatcatagtatgcacactactgaatgtatagtttttaa |
300 |
T |
|
| Q |
468 |
tattgctgcttcttggttataataaagcttg |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
301 |
tattgctgcttcttggttataataaagcttg |
331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 117 - 498
Target Start/End: Original strand, 245939 - 246323
Alignment:
| Q |
117 |
tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcctttgat |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
245939 |
tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcatttgat |
246038 |
T |
|
| Q |
217 |
ttagtttccaaattaaaaccactcatgagatctttaatttttgctatttgtattactatctactgttccattgcactaccatatgtttaaacctttctgc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
246039 |
ttagtttccaaattaaaaccactcatgagatctttaatttttgctatttgtgttactatcttctgttccattgcgctaccatatgtttaaacctttctgc |
246138 |
T |
|
| Q |
317 |
tattcattaatgaaatttccaccacatatttttaatctactttatattcattaatttaactaatagtattggaaagatttataacgttatatccaccttg |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
246139 |
tattcattaatgaaatttccaccacatgtttttaatctactttatattcattaatttaactaatagtattggaaagatttataacgttatattcaccttg |
246238 |
T |
|
| Q |
417 |
ttagtaatttattcatcatagtatgcacactactgaatgtatagtttttaata---ttgctgcttcttggttataataaagcttg |
498 |
Q |
| |
|
|||||||||||||||||||| ||||| || | ||||||||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
246239 |
ttagtaatttattcatcatattatgcgcaatcctgaatgtatagtttttaatattgttgatgtttcttggttataataaagcttg |
246323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 117 - 498
Target Start/End: Complemental strand, 37282259 - 37281875
Alignment:
| Q |
117 |
tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcctttgat |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37282259 |
tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcccgttgtaagttccattatcaaatattgacctatatgtgcatttgat |
37282160 |
T |
|
| Q |
217 |
ttagtttccaaattaaaaccactcatgagatctttaatttttgctatttgtattactatctactgttccattgcactaccatatgtttaaacctttctgc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37282159 |
ttagtttccaaattaaaaccactcatgagatctttaatttttgctatttgtgttactatcttctgttccattgcgctaccatatgtttaaacctttctgc |
37282060 |
T |
|
| Q |
317 |
tattcattaatgaaatttccaccacatatttttaatctactttatattcattaatttaactaatagtattggaaagatttataacgttatatccaccttg |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37282059 |
tattcattaatgaaatttccaccacatgtttttaatctactttatattcattaatttaactaatagtattggaaagatttataacgttatattcaccttg |
37281960 |
T |
|
| Q |
417 |
ttagtaatttattcatcatagtatgcacactactgaatgtatagtttttaata---ttgctgcttcttggttataataaagcttg |
498 |
Q |
| |
|
|||||||||||||||||||| ||||| || | ||||||||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
37281959 |
ttagtaatttattcatcatattatgcgcaatcctgaatgtatagtttttaatattgttgatgtttcttggttataataaagcttg |
37281875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 167 - 462
Target Start/End: Original strand, 7245 - 7540
Alignment:
| Q |
167 |
gtcctgttgtaagttccattatcaaatattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatgagatctttaatttttgctatttg |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7245 |
gtcctgttgtaagttccattatcaaatattgacctatatgtgcctttgatttagtttccaaattaaaaccactcatgagatctttaatttttgctatttg |
7344 |
T |
|
| Q |
267 |
tattactatctactgttccattgcactaccatatgtttaaacctttctgctattcattaatgaaatttccaccacatatttttaatctactttatattca |
366 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7345 |
tgttactatctactgttccattgcactaccatatgtttaaacctttctgctattcattaatgaaatttccaccacatgtttttaatctactttatattca |
7444 |
T |
|
| Q |
367 |
ttaatttaactaatagtattggaaagatttataacgttatatccaccttgttagtaatttattcatcatagtatgcacactactgaatgtatagtt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7445 |
ttaatttaactaatagtattggaaagatttataacgttatatccaccttgttagtaatttattcatcatagtatgcacactactgaatgtatagtt |
7540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 40933961 - 40934112
Alignment:
| Q |
117 |
tttctcatggacatattttttgaa-gtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaa------atattgacctatatgtgc |
209 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||| |||||||| | | ||||| |||||||||||| |
|
|
| T |
40933961 |
tttctcatggacatatttttttaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccattaccgagattcaatattaacctatatgtgc |
40934060 |
T |
|
| Q |
210 |
ctttgatttagtttccaaattaaaaccactcatgagatctttaatttttgct |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40934061 |
ctttgatttagtttccaaattaaaaccactcatgggatctttaatttttgct |
40934112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 11232957 - 11233109
Alignment:
| Q |
117 |
tttctcatggacatattttttgaa--gtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaa------atattgacctatatgtg |
208 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||| |||||||| | | ||||| ||||||||||| |
|
|
| T |
11232957 |
tttctcatggacgtattttttgaaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccattaccgagattcaatattaacctatatgtg |
11233056 |
T |
|
| Q |
209 |
cctttgatttagtttccaaattaaaaccactcatgagatctttaatttttgct |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11233057 |
cctttgatttagtttccaaattaaaaccactcatgggatctttaatttttgct |
11233109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 23348366 - 23348496
Alignment:
| Q |
117 |
tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatca------aatattgacctatatgtgcc |
210 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| |||||| ||| |
|
|
| T |
23348366 |
tttctcatggacagatttttt-aagtcgtatttgatataaaaattgttttgttttgttgtaagttccattatcaaaattcaatactgatctatat-tgct |
23348463 |
T |
|
| Q |
211 |
tttgatttagtttccaaattaaaaccactcatg |
243 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |
|
|
| T |
23348464 |
tttgatttggtttcaaaattaaaaccactcatg |
23348496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University