View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8590_low_20 (Length: 331)
Name: NF8590_low_20
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 11110471 - 11110784
Alignment:
| Q |
1 |
atacgatattcagaagagatggctaaaacacttgacatcattcggtggtcgaagcaagtattagaccttgaattgaatattcgtaagacatgggtctttt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11110471 |
atacgagattcagaggagatggctaaaacacttgacatcattcggtggtcgaagcaaggattagaccttgaattgaatattcgtaagacataggtctttt |
11110570 |
T |
|
| Q |
101 |
ggtcttcgtgtgatgacaataaccattgttggaggttgtttcctttgaacattgagagaccagtgttacgggtg-aatttccttgagggggtattaatca |
199 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||| || |||| |
|
|
| T |
11110571 |
ggtcttcatgtgacgacaataaccattgttggaggttgtttcctttgaacattgggagaccagtgttgcgggtgaaattttcttgagggggtgtttatca |
11110670 |
T |
|
| Q |
200 |
agatagagattgatatatccgagagtcgaactagaatgatatgatctcgatgttcatgctgatgatgatccggtacgacgaaggaagagctccattgtgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11110671 |
agatagagattgatatatccgagagttgaactagaatgatatgatctcgatgttcatgttgatgatgatccggtacgacgaaggaagagctccgttgtgg |
11110770 |
T |
|
| Q |
300 |
cagaacatgtcctt |
313 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
11110771 |
cataacctgtcctt |
11110784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 4700960 - 4700905
Alignment:
| Q |
60 |
attagaccttgaattgaatattcgtaagacatgggtcttttggtcttcgtgtgatg |
115 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| | |||||||| ||||||||||| |
|
|
| T |
4700960 |
attaggccttgaattgaataatcgtaagacatagatcttttggcattcgtgtgatg |
4700905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University