View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_24 (Length: 310)
Name: NF8590_low_24
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 32045698 - 32045832
Alignment:
| Q |
8 |
tggacatcaggtggtgttttgagaaaaatctatgtttcacattgaacaaagataaggcacaatgaaatgagtttataaaaaagtgatcactctccttaca |
107 |
Q |
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| T |
32045698 |
tggacatgaggtggtgttttgagaaaaatctatgtttcacattgaacaaagataaggcacaatgaaatgagtttataaaaaagtgatcactctccttaca |
32045797 |
T |
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| Q |
108 |
aggtttttatttatatttaggaggatgagttaatt |
142 |
Q |
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| T |
32045798 |
aggtttttatttatatttaggaggatgagttaatt |
32045832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 138 - 302
Target Start/End: Original strand, 32046020 - 32046184
Alignment:
| Q |
138 |
taattccaatgttaagacataaggaaaaaatataggtgcattttcttagatgattttcatattgttttaactaaactactcatannnnnnnactactcat |
237 |
Q |
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| T |
32046020 |
taattccaatgttaagacataaggaaaaaatataggtacattttcttagataattttcgtattgttttaactaaactactcatatttttttactactcat |
32046119 |
T |
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| Q |
238 |
gattttcttaatagctgtgtaactgcgtcatttttcaaccgtaacagatcttgatccatattatt |
302 |
Q |
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| T |
32046120 |
gattttcttaataactgtgtaacggcgtcaattttcaaccgtaacagatcatgatccatattatt |
32046184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 39330035 - 39330094
Alignment:
| Q |
162 |
aaaaaatataggtgcattttcttagatgattttcatattgtt-ttaactaaactactcat |
220 |
Q |
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| T |
39330035 |
aaaaaacataggtgcattttcttagatgtttttcatatggttcataaataaactactcat |
39330094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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