View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_26 (Length: 303)
Name: NF8590_low_26
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 28279351 - 28279638
Alignment:
| Q |
1 |
tcaaacaacagtgattgctggaaccataggatatttggctccagaatatataagtacaggtaaggctagcaaagaatctgatgtctatagctttggcgtt |
100 |
Q |
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| T |
28279351 |
tcaaacaacagtgattgctggaaccttaggatatttggctccagaatatataagtacaggtaaggctagcaaagaatctgatgtctatagctttggggtt |
28279450 |
T |
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| Q |
101 |
gtcgtcttggagatcacaactggaaggaaagccgttgatgttatgagggataaagatggagataagggattgattgagtgggtttgggatcattatggaa |
200 |
Q |
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| T |
28279451 |
gtcgtcttggagatcacaactggaaggaaagccgttgaagttatggaggacaaagatggagataagggattgattgagtgggtttgggatcattatggaa |
28279550 |
T |
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| Q |
201 |
gagaagaaatacttgtgaccatggatgagaatttgcgaaaggatttcgatgagaaacaagtagagtgtttgttgattgttggattatg |
288 |
Q |
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| T |
28279551 |
gagaagaaatactcgtgaccatggatgagaatttgcgaaaggatttcgatgagaaacaagtagagtgtttgttgattgttggattatg |
28279638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 288
Target Start/End: Original strand, 28289217 - 28289503
Alignment:
| Q |
2 |
caaacaacagtgattgctggaaccataggatatttggctccagaatatataagtacaggtaaggctagcaaagaatctgatgtctatagctttggcgttg |
101 |
Q |
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| T |
28289217 |
caaacaacagtggttgccggaaccttaggctatttggctccagaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttg |
28289316 |
T |
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| Q |
102 |
tcgtcttggagatcacaactggaaggaaagccgttgatgttatgagggataaagatggagataagggattgattgagtgggtttgggatcattatggaag |
201 |
Q |
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| T |
28289317 |
ttgccttggagatcacaactggacggaaagctgttgaagttatgagggataaagatggagataagggattgattgagtgggtttgggatcatcatggaag |
28289416 |
T |
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| Q |
202 |
agaagaaatacttgtgaccatggatgagaatttgcgaaaggatttcgatgagaaacaagtagagtgtttgttgattgttggattatg |
288 |
Q |
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| T |
28289417 |
aggagagctacttgtgaccatggatgagaatttgcgaaaggatttcgatgagaaacaagtagagtgtttgttgattgttggattatg |
28289503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 2 - 288
Target Start/End: Complemental strand, 28264519 - 28264233
Alignment:
| Q |
2 |
caaacaacagtgattgctggaaccataggatatttggctccagaatatataagtacaggtaaggctagcaaagaatctgatgtctatagctttggcgttg |
101 |
Q |
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|||||||||||| |||| |||||| |||| ||| ||||||| ||||||||||||||||||||| |||||||||| || ||||| ||||| ||||| |||| |
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| T |
28264519 |
caaacaacagtggttgccggaaccttaggctatatggctccggaatatataagtacaggtaagactagcaaagagtcagatgtgtatagttttggggttg |
28264420 |
T |
|
| Q |
102 |
tcgtcttggagatcacaactggaaggaaagccgttgatgttatgagggataaagatggagataagggattgattgagtgggtttgggatcattatggaag |
201 |
Q |
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| T |
28264419 |
ttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaaggtgaagataagggattaattgactgggtttgggatcattatggaag |
28264320 |
T |
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| Q |
202 |
agaagaaatacttgtgaccatggatgagaatttgcgaaaggatttcgatgagaaacaagtagagtgtttgttgattgttggattatg |
288 |
Q |
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| T |
28264319 |
aggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgagaaacaagtagagtttttgttgattgttggattatg |
28264233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 288
Target Start/End: Complemental strand, 28304500 - 28304250
Alignment:
| Q |
38 |
gctccagaatatataagtacaggtaaggctagcaaagaatctgatgtctatagctttggcgttgtcgtcttggagatcacaactggaaggaaagccgttg |
137 |
Q |
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|||||||||||| | |||||||| | ||| || ||||| || ||||| ||||| ||||| | || ||||| ||||| || | |||| ||||| || |
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| T |
28304500 |
gctccagaatatgtgagtacaggaagggcgagtaaagagtcagatgtttatagttttgggatagttgtcttagagataacctccggaaaaaaagctactg |
28304401 |
T |
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| Q |
138 |
atgttatgagggataaagatggagataagggattgattgagtgggtttgggatcattatggaagagaagaaatacttgtgaccatggatgagaatttgcg |
237 |
Q |
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| T |
28304400 |
aagttatgaaggagaaagatgaagagaagggaatgattgagtgggtttgggatcattatggaaaaggagagctacttgtggcaatggatgagaatttgag |
28304301 |
T |
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| Q |
238 |
aaaggatttcgatgagaaacaagtagagtgtttgttgattgttggattatg |
288 |
Q |
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| T |
28304300 |
gaaagattttgatgagaaacaagtagagtgcttgatgattgttggattatg |
28304250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 28294171 - 28294051
Alignment:
| Q |
165 |
agggattgattgagtgggtttgggatcattatggaagagaagaaatacttgtgaccatggatgagaatttgcgaaaggatttcgatgagaaacaagtaga |
264 |
Q |
| |
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||||| ||||||| ||| ||||||||||||||||||| | ||| ||||||| |||||||||| ||||||| ||| ||||| ||||||||| ||||||| |
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| T |
28294171 |
agggaatgattgaatggatttgggatcattatggaagtggagagctacttgtcgccatggatgaaaatttgcaaaatgattttgatgagaaagaagtaga |
28294072 |
T |
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| Q |
265 |
gtgtttgttgattgttggatt |
285 |
Q |
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||| ||| ||||||||||||| |
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| T |
28294071 |
gtgcttgatgattgttggatt |
28294051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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