View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_28 (Length: 250)
Name: NF8590_low_28
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 17776148 - 17775912
Alignment:
| Q |
1 |
taagcatgattttgtatcaagagcatgctcacatagattaggagctgaggagagattgaagaaggagataggtttatttagatgagaaataataagggct |
100 |
Q |
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| T |
17776148 |
taagcatgattttgtatcaagagcatgctcacatagattaggagctgaggagagattgaagaaggagataggtttatttagatgagaaataataagggct |
17776049 |
T |
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| Q |
101 |
gatgaacttatgatagcaactaaagagaggactaaccaaaatgtttttggaatggattttcttggcttgtctagcaaagattgttggatagccatactga |
200 |
Q |
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| T |
17776048 |
gatgaacttatgatagcaactaaagagaggactaaccaaaatgtttttggaatggattttcttggcttgtctagcaaagattgttggatagccatactga |
17775949 |
T |
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| Q |
201 |
tactagtgactagtactggttttgttcactgtgatct |
237 |
Q |
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| T |
17775948 |
tactagtgactagtactggttttgttcactgtgatct |
17775912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 17806840 - 17806639
Alignment:
| Q |
1 |
taagcatgattttgtatcaagagcatgctcacatagattaggagctgaggagagattgaagaaggagataggtttatttagatgagaaataataagggct |
100 |
Q |
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| T |
17806840 |
taagcatgagtttgtatcaactgcatgttcacacacattaggagctgaggagaagtggaaaatggagatgggtttgttcagatgagaaataataagggct |
17806741 |
T |
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| Q |
101 |
gatgaacttatgatagcaactaaagagaggactaaccaaaatgtttttggaatggattttcttggcttgtctagcaaagattgttggatagccatactga |
200 |
Q |
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| T |
17806740 |
gatgagcttatgatagcagctaaagagagaactaaccaaaatgttttgggaatggattttctaggcttgtgtagcaaagtttcttgggtagccattctga |
17806641 |
T |
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| Q |
201 |
ta |
202 |
Q |
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|| |
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| T |
17806640 |
ta |
17806639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 202
Target Start/End: Complemental strand, 17820548 - 17820411
Alignment:
| Q |
65 |
gagataggtttatttagatgagaaataataagggctgatgaacttatgatagcaactaaagagaggactaaccaaaatgtttttggaatggattttcttg |
164 |
Q |
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||||| ||||| || ||||||| | ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |
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| T |
17820548 |
gagattggtttcttgagatgagtagaaattagggctgatgagattatgatagcaactaaagagaggattaaccaaaatgtttttggaagggattttctag |
17820449 |
T |
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| Q |
165 |
gcttgtctagcaaagattgttggatagccatactgata |
202 |
Q |
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| T |
17820448 |
gcttgtctagcaaagattgttgattagccatagtgata |
17820411 |
T |
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