View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_29 (Length: 247)
Name: NF8590_low_29
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 24002313 - 24002548
Alignment:
| Q |
1 |
aaaaatctcagaattcatataaatctttgataaatataagtacatacaaaattaaactgagacatttgagtctcttaaccattacttctcttcaaaacat |
100 |
Q |
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| T |
24002313 |
aaaaatctcagaattcatataaatctttgataaatataagtacatacaaaattaaactgagacatttgagtctcttaaccattacttctcttcaaaacat |
24002412 |
T |
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| Q |
101 |
ccgttaaatgatcacgtgtaatggtaaggggacatggtcccttacgtaagagatcatcagaggttcaattaccacctcttgtgcatgaaaaatattcagt |
200 |
Q |
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| T |
24002413 |
ccgttaaatgatcacgtgtaatggtaaggggacatggtcccttacgtaagagatcatcagatgttcaattaccacctcttgtgcatgaaaaatattcagt |
24002512 |
T |
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| Q |
201 |
ttggagatgaaactcaccttggtatctcacaggttc |
236 |
Q |
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| T |
24002513 |
ttggagatgaaactcaccttggtatctcacaggttc |
24002548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 23938333 - 23938432
Alignment:
| Q |
135 |
tggtcccttacgtaagagatcatcagaggttcaattaccacctcttgtgcatgaaaaatattcagtttggagatg-aaactcaccttggtatctcacagg |
233 |
Q |
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| T |
23938333 |
tggtcccttacgtaagtgatca---gaggttcaattactgcctcttgtgcatgaaaaatattcagttgggaaatgaaaactcaccttggtatctcaaagg |
23938429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 23962090 - 23962014
Alignment:
| Q |
44 |
atacaaaattaaactgagacatttgagtctcttaaccattacttctcttcaaaacatccgttaaatgatcacgtgta |
120 |
Q |
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| T |
23962090 |
atacaaaattaaactgagacatttcagtttcttaaccattacttctctttaaactgtccgttaaatgatcacatgta |
23962014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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