View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8590_low_3 (Length: 453)

Name: NF8590_low_3
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8590_low_3
NF8590_low_3
[»] chr1 (2 HSPs)
chr1 (20-289)||(14249523-14249792)
chr1 (326-439)||(9756423-9756537)
[»] scaffold0062 (1 HSPs)
scaffold0062 (326-436)||(2710-2821)
[»] chr8 (4 HSPs)
chr8 (324-438)||(23432813-23432928)
chr8 (329-438)||(5826417-5826526)
chr8 (359-438)||(5829052-5829131)
chr8 (334-438)||(18565926-18566031)
[»] chr7 (7 HSPs)
chr7 (331-437)||(17915699-17915805)
chr7 (331-441)||(8807530-8807637)
chr7 (309-438)||(20053323-20053452)
chr7 (326-381)||(19842405-19842460)
chr7 (334-438)||(2278286-2278391)
chr7 (329-411)||(17918829-17918910)
chr7 (292-369)||(2641637-2641714)
[»] chr5 (3 HSPs)
chr5 (326-438)||(24885115-24885227)
chr5 (326-429)||(21216321-21216425)
chr5 (326-371)||(9824355-9824400)
[»] chr2 (4 HSPs)
chr2 (324-437)||(8685770-8685884)
chr2 (326-435)||(16197355-16197464)
chr2 (326-438)||(25348191-25348303)
chr2 (326-378)||(16152157-16152209)
[»] chr6 (3 HSPs)
chr6 (331-438)||(14201411-14201519)
chr6 (326-376)||(19731605-19731655)
chr6 (352-401)||(21686949-21686998)
[»] chr4 (2 HSPs)
chr4 (326-423)||(5842715-5842813)
chr4 (326-411)||(22316624-22316709)
[»] chr3 (3 HSPs)
chr3 (331-412)||(21318566-21318647)
chr3 (326-435)||(13340652-13340762)
chr3 (326-411)||(13177777-13177862)
[»] scaffold0300 (2 HSPs)
scaffold0300 (346-414)||(7499-7567)
scaffold0300 (365-407)||(12236-12278)
[»] scaffold0711 (1 HSPs)
scaffold0711 (325-391)||(1553-1620)
[»] scaffold0032 (1 HSPs)
scaffold0032 (332-399)||(79442-79509)
[»] scaffold0002 (1 HSPs)
scaffold0002 (326-411)||(129126-129211)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 14249792 - 14249523
Alignment:
Q  20 gttgtgtgtgaagtagaatatttgttagtcaaattagggttaggttattgttatttttgagtgatgaagtccttgaattgaggagttcaattagagttag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249792 gttgtgtgtgaagtagaatatttgttagtcaaattagggttaggttattgttatttttgagtgatgaagtccttgaattgaggagttcaattagagttag 14249693  T
Q  120 ggttttcctaggtgggaaaactgattagggttttagaatatggtgaattatttgtttagtgattgaaggaaggaaagcatatggatgatgaataactagt 219  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249692 ggttttcctaggtgggaaaactgattagggttttagaagatggtgaattatttgtttagtgattgaaggaaggaaagcatatggatgatgaataactagt 14249593  T
Q  220 gattgaagcttgattggtatgcaaatgcgagcataatggaacagaatggaatgtgaagatcgaaccggga 289  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14249592 gattgaagcttgattggtatgcaaatgcgagcgtaatggaacagaatggaatgtgaagatcgaaccggga 14249523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 9756537 - 9756423
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagcc-agtcagattc 424  Q
    |||| |||||||||||||||| ||| |||||  ||||| ||||||||||||||||||||| | | | ||||||||  |||||||||||| ||||||||||    
T  9756537 aacttctctatcagatactattatagagacaactcacagaataagacaaaagcttacgtggaatctgggtccctcgtatccaagtagccaagtcagattc 9756438  T
Q  425 tatgtctgatgtcca 439  Q
    |  |||| |||||||    
T  9756437 tgagtctaatgtcca 9756423  T

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Target: scaffold0062 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 326 - 436
Target Start/End: Original strand, 2710 - 2821
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta-gccagtcagattc 424  Q
    |||| |||||||||||||||||||| |||||  |||||  |||||||||||||||| ||||||| | ||||||||| ||||||||| || ||||||||||    
T  2710 aactactctatcagatactatgatagagacaactcacagtataagacaaaagcttatgtgaattatgggtccctcatatccaagtatgcaagtcagattc 2809  T
Q  425 tatgtctgatgt 436  Q
    ||||||||||||    
T  2810 tatgtctgatgt 2821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 324 - 438
Target Start/End: Complemental strand, 23432928 - 23432813
Alignment:
Q  324 aaaactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta-gccagtcagat 422  Q
    ||||||||||||||||||||||||||| || ||  ||||| ||||||||||||||||||||  |||   ||||||||||||||||||| |||||||||||    
T  23432928 aaaactgctctatcagatactatgatagaggcaactcacagaataagacaaaagcttacgtagattcctggtccctcagatccaagtatgccagtcagat 23432829  T
Q  423 tctatgtctgatgtcc 438  Q
    ||| ||| ||||||||    
T  23432828 tctgtgtttgatgtcc 23432813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 438
Target Start/End: Original strand, 5826417 - 5826526
Alignment:
Q  329 tgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagccagtcagattctatg 428  Q
    |||||||||||||| |||||||   |||  |||||||||||||||||| |||||||||||| |  ||| ||||||||||||||||||| || |||||  |    
T  5826417 tgctctatcagatattatgatagtaacaactcacataataagacaaaatcttacgtgaattctgagtctctcagatccaagtagccagccaaattctgcg 5826516  T
Q  429 tctgatgtcc 438  Q
    ||||||||||    
T  5826517 tctgatgtcc 5826526  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 438
Target Start/End: Original strand, 5829052 - 5829131
Alignment:
Q  359 tcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagccagtcagattctatgtctgatgtcc 438  Q
    ||||||||||||||||||||||||||||||| |  ||| |||||||||||||||| || || ||||| ||||||||||||    
T  5829052 tcacataataagacaaaagcttacgtgaattctgagtctctcagatccaagtagctagccaaattctgtgtctgatgtcc 5829131  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 438
Target Start/End: Original strand, 18565926 - 18566031
Alignment:
Q  334 tatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta-gccagtcagattctatgtctg 432  Q
    ||||||||| ||||||| ||||   ||||| |||||||||||||  |||||| ||| | ||||||||||||||||||| | ||||||| |||||||||||    
T  18565926 tatcagataatatgatagagacctctcacaaaataagacaaaagtctacgtggattctgggtccctcagatccaagtatgtcagtcagcttctatgtctg 18566025  T
Q  433 atgtcc 438  Q
    ||||||    
T  18566026 atgtcc 18566031  T

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Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 331 - 437
Target Start/End: Original strand, 17915699 - 17915805
Alignment:
Q  331 ctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagccagtcagattctatgtc 430  Q
    |||||||||||||||||  | |||||| ||||| ||||||||||||||||||||| ||| | ||||||| ||||||||||||| ||||||||| | ||||    
T  17915699 ctctatcagatactatggcagagacagctcacagaataagacaaaagcttacgtggattctgggtccctaagatccaagtagctagtcagattatgtgtc 17915798  T
Q  431 tgatgtc 437  Q
    |||||||    
T  17915799 tgatgtc 17915805  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 331 - 441
Target Start/End: Original strand, 8807530 - 8807637
Alignment:
Q  331 ctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagccagtcagattctatgtc 430  Q
    |||||||||||| ||||||| |||||| ||||| |||||||||||||   || || ||| | |||||||| |||||||||||||||||||||| | ||||    
T  8807530 ctctatcagatattatgatagagacagctcacagaataagacaaaag---acatggattctgggtccctctgatccaagtagccagtcagattttgtgtc 8807626  T
Q  431 tgatgtccatc 441  Q
    |||| ||||||    
T  8807627 tgatttccatc 8807637  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 438
Target Start/End: Original strand, 20053323 - 20053452
Alignment:
Q  309 atggatgaagaaaacaaaactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaa 408  Q
    ||||| ||||| || | ||||||| |||||||| |||||||| ||| |  ||||| ||||| | || |||||| ||| ||| | ||||||| ||||||||    
T  20053323 atggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtggattatgggtcccttagatccaa 20053422  T
Q  409 gtagccagtcagattctatgtctgatgtcc 438  Q
    ||||||||||| ||| | ||| ||||||||    
T  20053423 gtagccagtcaaattttgtgtttgatgtcc 20053452  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 19842460 - 19842405
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagctta 381  Q
    ||||||||||||||||||||||||| | ||| |||||| ||||| |||||||||||    
T  19842460 aactgctctatcagatactatgatagacacaattcacagaataaaacaaaagctta 19842405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 438
Target Start/End: Original strand, 2278286 - 2278391
Alignment:
Q  334 tatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta-gccagtcagattctatgtctg 432  Q
    ||||| ||||||||||| ||  || ||||| ||||||||||||||||| ||| ||| | |||||||  |||||||||| ||||||||  |||| ||| ||    
T  2278286 tatcatatactatgatagagttagctcacaaaataagacaaaagcttatgtggattctgggtcccttggatccaagtatgccagtcaacttctgtgtttg 2278385  T
Q  433 atgtcc 438  Q
    ||||||    
T  2278386 atgtcc 2278391  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 411
Target Start/End: Original strand, 17918829 - 17918910
Alignment:
Q  329 tgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta 411  Q
    ||||||||| ||||||||||||  |||| ||||||| ||||||| |||||||| ||| ||| | ||||||| | |||||||||    
T  17918829 tgctctatcggatactatgatagggacaattcacatgataagac-aaagcttatgtggattctgggtcccttatatccaagta 17918910  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 2641714 - 2641637
Alignment:
Q  292 tctggttgtgcacataaatggatgaagaaaacaaaactgctctatcagatactatgataaagacagttcacataataa 369  Q
    ||||||||  ||||||||  || ||||| || | ||||||||||||||||||||||||| ||| || ||||| |||||    
T  2641714 tctggttgcacacataaacagaagaagacaaaagaactgctctatcagatactatgatagagatagctcacagaataa 2641637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 438
Target Start/End: Complemental strand, 24885227 - 24885115
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagccagtcagattct 425  Q
    ||||||||||  |||| |||||||| | | |  ||||||||||||||||||||||| ||| ||| ||||||||| |||| ||||||||| ||||||||||    
T  24885227 aactgctctactagatgctatgatagaaaaaactcacataataagacaaaagcttatgtggattctaggtcccttagattcaagtagcctgtcagattct 24885128  T
Q  426 atgtctgatgtcc 438  Q
     ||||| ||||||    
T  24885127 gtgtctaatgtcc 24885115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 429
Target Start/End: Complemental strand, 21216425 - 21216321
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta-gccagtcagattc 424  Q
    ||||| ||||||||||||||||| | | |||  | | | ||||||||||| ||||||||  ||||| |||||||| |||||||||| || |||||||||     
T  21216425 aactgatctatcagatactatgacagatacaacttataaaataagacaaaggcttacgttgattttgggtccctcggatccaagtatgcaagtcagatta 21216326  T
Q  425 tatgt 429  Q
    |||||    
T  21216325 tatgt 21216321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 9824355 - 9824400
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataaga 371  Q
    |||||||||||||||||||| ||||  |||| ||||||||||||||    
T  9824355 aactgctctatcagatactaagatagggacaattcacataataaga 9824400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 8685770 - 8685884
Alignment:
Q  324 aaaactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta-gccagtcagat 422  Q
    |||||| |||||| ||||||||||||| ||| |  ||||||||||||||||||||||||||  |||   ||||||||| ||||||||| |||| ||||||    
T  8685770 aaaacttctctattagatactatgatagagaaaactcacataataagacaaaagcttacgtagattcctggtccctcatatccaagtatgccaatcagat 8685869  T
Q  423 tctatgtctgatgtc 437  Q
    ||| ||| |||||||    
T  8685870 tctgtgtttgatgtc 8685884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 435
Target Start/End: Complemental strand, 16197464 - 16197355
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagccagtcagattct 425  Q
    ||||||||||||||||| |||||||  ||||   |||| ||||||| ||||| |||| || ||| |  |||||||||||||||||| |||||||||||||    
T  16197464 aactgctctatcagatattatgatagtgacaacacacaaaataagataaaagtttacatggattatgagtccctcagatccaagtacccagtcagattct 16197365  T
Q  426 atgtctgatg 435  Q
     ||| |||||    
T  16197364 gtgtatgatg 16197355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 438
Target Start/End: Original strand, 25348191 - 25348303
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagccagtcagattct 425  Q
    |||| ||||| ||||| |||||||| |||||  ||||| ||||| |||||| |||||||| ||| ||||||||| |||||||| || || |||| ||| |    
T  25348191 aacttctctaccagatgctatgatagagacaactcacagaataacacaaaatcttacgtggattctaggtccctgagatccaattatcctgtcaaatttt 25348290  T
Q  426 atgtctgatgtcc 438  Q
      |||||||||||    
T  25348291 gcgtctgatgtcc 25348303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 16152209 - 16152157
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagc 378  Q
    |||| |||||||||||||||||||| |||||  ||| | ||||||||||||||    
T  16152209 aactactctatcagatactatgatagagacaaatcaaagaataagacaaaagc 16152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 438
Target Start/End: Original strand, 14201411 - 14201519
Alignment:
Q  331 ctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagcc-agtcagattctatgt 429  Q
    ||||||||||||| |||||| |||||  ||||| |||| |||||||||||||||||||| |  |||||||||||| ||||| || ||||||  ||| |||    
T  14201411 ctctatcagataccatgatagagacatatcacagaatatgacaaaagcttacgtgaattatgagtccctcagatcaaagtatcctagtcagtgtctgtgt 14201510  T
Q  430 ctgatgtcc 438  Q
    |||||||||    
T  14201511 ctgatgtcc 14201519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 19731605 - 19731655
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaa 376  Q
    ||||||||||||||||||||||||| ||| || ||||| ||| ||||||||    
T  19731605 aactgctctatcagatactatgatagagatagctcacagaatgagacaaaa 19731655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 21686998 - 21686949
Alignment:
Q  352 agacagttcacataataagacaaaagcttacgtgaattttaggtccctca 401  Q
    |||||| ||||| |||||||||||||| |||||| ||||| |||||||||    
T  21686998 agacagctcacagaataagacaaaagcatacgtggattttgggtccctca 21686949  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 423
Target Start/End: Complemental strand, 5842813 - 5842715
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta-gccagtcagatt 423  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||| ||||| ||| ||  ||| | ||||| |||||| |||||| ||||||||||||    
T  5842813 aactgctctatcagatactatgatagagacaactcacataataagataaaagattatgtagattctgggtccttcagattcaagtatgccagtcagatt 5842715  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 411
Target Start/End: Complemental strand, 22316709 - 22316624
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta 411  Q
    |||||||||||||| |||||||||| |||||  ||||| ||||||||||||||||||||| ||| | |||| |||| || ||||||    
T  22316709 aactgctctatcagttactatgatagagacaactcacagaataagacaaaagcttacgtggattctgggtctctcatattcaagta 22316624  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 412
Target Start/End: Original strand, 21318566 - 21318647
Alignment:
Q  331 ctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtag 412  Q
    |||||||||||||||||||| ||| |  ||||| ||||||||||||||||||||| ||| ||||| ||||  ||||||||||    
T  21318566 ctctatcagatactatgatagagataactcacagaataagacaaaagcttacgtggattctaggttcctctaatccaagtag 21318647  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 435
Target Start/End: Complemental strand, 13340762 - 13340652
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta-gccagtcagattc 424  Q
    |||| ||||||||||||||| | || |||||| |||||  || ||||||||  |||| || ||||  ||||||||||||||||||| ||||| || |||     
T  13340762 aactcctctatcagatactacggtatagacagctcacaatattagacaaaaatttacctgcatttcgggtccctcagatccaagtatgccagacatatta 13340663  T
Q  425 tatgtctgatg 435  Q
    | |||||||||    
T  13340662 tgtgtctgatg 13340652  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 411
Target Start/End: Complemental strand, 13177862 - 13177777
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta 411  Q
    |||| |||||||| |||||| | || |||||| |||||  || ||||||||  ||||||| ||||  |||||||||||||||||||    
T  13177862 aactcctctatcaaatactacggtatagacagctcacagtattagacaaaaatttacgtgcatttcgggtccctcagatccaagta 13177777  T

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Target: scaffold0300 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 414
Target Start/End: Original strand, 7499 - 7567
Alignment:
Q  346 tgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagtagcc 414  Q
    ||||| |||||  ||||| |||||||||||| |||||||| ||| ||||||||||||||||| ||||||    
T  7499 tgatagagacaactcacagaataagacaaaaacttacgtggattctaggtccctcagatccatgtagcc 7567  T

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Target: scaffold0300; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 12236 - 12278
Alignment:
Q  365 aataagacaaaagcttacgtgaattttaggtccctcagatcca 407  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  12236 aataagacaaaagcttacgtggattttgggtccctcagatcca 12278  T

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Target: scaffold0711 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 1620 - 1553
Alignment:
Q  325 aaactgctctatcagatactatgataaa--gacagttcacataataagacaaaagcttacgtgaatttt 391  Q
    ||||| |||||||||||||||||||| |  || ||||||||||||||||| ||||| ||||||||||||    
T  1620 aaactactctatcagatactatgatatagggatagttcacataataagac-aaagcctacgtgaatttt 1553  T

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Target: scaffold0032 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 79442 - 79509
Alignment:
Q  332 tctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccct 399  Q
    |||| ||||| | |||||| ||||| || ||||||||||| ||||||||||||| ||| |||||||||    
T  79442 tctaccagatgcaatgatagagacaattaacataataagagaaaagcttacgtggattctaggtccct 79509  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 411
Target Start/End: Original strand, 129126 - 129211
Alignment:
Q  326 aactgctctatcagatactatgataaagacagttcacataataagacaaaagcttacgtgaattttaggtccctcagatccaagta 411  Q
    |||| |||||||| |||||| | || |||||| |||||  || ||||||||  ||||||| ||||  |||||||||||||||||||    
T  129126 aactcctctatcaaatactacggtatagacagctcacagtattagacaaaaatttacgtgcatttcgggtccctcagatccaagta 129211  T

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