View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8590_low_9 (Length: 387)
Name: NF8590_low_9
Description: NF8590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8590_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 38187215 - 38186848
Alignment:
| Q |
7 |
tttggtgttctataggatgataataactgttatatat----ttgttgcttctaacaggaagctttattccccagaagcaaggatgaagaagatatttagg |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187215 |
tttgctgttctataggatgataataactgttatatatatatttgttgcttctaacaggaagctttattccccagaagcaaggatgaagaagatatttagg |
38187116 |
T |
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| Q |
103 |
gctcatggtggtaggaaaccacctccccaacgagtagttttcatttttctacaaataccatcttcctagaatacacatgttaatcagtcttcaccgtcta |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38187115 |
gctcatggtggtaggaaaccacctccccaacgagtagttttcatttttctacaaataccatcttcctagaatacatatgttaatcagtcttcaccgtcta |
38187016 |
T |
|
| Q |
203 |
cctcacatgcaaaataaaatgccagattcactccatgcttcttcctcttaggacatgtttggtgtctaagatatgatcgagaggggtaagatataaagca |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187015 |
cctcacatgcaaaataaaatgccagattcactccatg---cttcctcttaggacatgtttggtgtctaagatatgatcgagaggggtaagatataaagca |
38186919 |
T |
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| Q |
303 |
ggatttgatatgatatagacaagataacaattatcctattatgtctttgacacgcacatgatatcaaatat |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38186918 |
ggatttgatatgatatagacaagataacaattatcctattatgcctttgacacgcacatgatatcaaatat |
38186848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 30952206 - 30952149
Alignment:
| Q |
308 |
tgatatgatatagacaagataacaattatcctattatgtctttgacacgcacatgata |
365 |
Q |
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| T |
30952206 |
tgatatgatatagatatgataacatttatcctatcatgtgtttgatgcgcacatgata |
30952149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 38924055 - 38924136
Alignment:
| Q |
19 |
taggatgataataactgttatatatttgttgcttctaacaggaagctttattccccagaagcaaggatgaagaagatattta |
100 |
Q |
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||||||||||||||||||||| ||| || ||||||||| |||||| | |||||||||||||| ||||||| ||| |||| |
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| T |
38924055 |
taggatgataataactgttatttatctgctgcttctaataggaagtcgcaatccccagaagcaagtatgaagaggatgttta |
38924136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 33819401 - 33819457
Alignment:
| Q |
309 |
gatatgatatagacaagataacaattatcctattatgtctttgacacgcacatgata |
365 |
Q |
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||||||||||| ||| ||||| | ||||||||| |||| |||||| ||||||||||| |
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| T |
33819401 |
gatatgatataaacatgataatatttatcctatgatgtgtttgacgcgcacatgata |
33819457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 14135157 - 14135214
Alignment:
| Q |
308 |
tgatatgatatagacaagataacaattatcctattatgtctttgacacgcacatgata |
365 |
Q |
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|||||||||||||||| ||||||| ||||| ||| |||| |||||| ||||||||||| |
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| T |
14135157 |
tgatatgatatagacatgataacatttatcatatcatgtatttgacgcgcacatgata |
14135214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 33911609 - 33911660
Alignment:
| Q |
314 |
gatatagacaagataacaattatcctattatgtctttgacacgcacatgata |
365 |
Q |
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|||||||||| ||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
33911609 |
gatatagacatgataacacttatcctattatgtgtttgatgcgcacatgata |
33911660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 23586117 - 23586060
Alignment:
| Q |
308 |
tgatatgatatagacaagataacaattatcctattatgtctttgacacgcacatgata |
365 |
Q |
| |
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||||| |||||||||| ||||||| ||||||||| |||| ||||| ||||||||||| |
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| T |
23586117 |
tgataggatatagacatgataacacttatcctatcatgtgtttgatgcgcacatgata |
23586060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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