View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8591_high_14 (Length: 307)

Name: NF8591_high_14
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8591_high_14
NF8591_high_14
[»] chr5 (1 HSPs)
chr5 (1-290)||(15507824-15508109)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 15508109 - 15507824
Alignment:
Q  1 acaatcaaggtcgttaaaaacaaaaagaatgaatgtgcaaataagttctatactcaagttaatagcataaaaacagtaaaatgcatataattgtgacaaa 100  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  15508109 acaatcaag-tcgctaaaaacaaaaagaatgaatgtgcaaataagttctacattcaagttaataacataaaa-cagtaaaatgcatataattgtgacaaa 15508012  T
Q  101 aattagagtgatcagaatactcatacattcatatttgtatattgaggtctaaatcatttatttattctataaatagattgaatttgatgtgtcaatttaa 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  15508011 a-ttagagtgatcagaatactcatacattcatatttgtatattgaggtctaaatcatttatttattctataa-tagattgaatttaatgtgtcaatttaa 15507914  T
Q  201 atcaaacgaacaccctaacaaaccataaaactaaataatttctcatcatcaagataacaaacaaaacgatgtttcactgagactgataaa 290  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15507913 atcaaacgaacaccctaacaagatataaaactaaataatttctcatcatcaagataacaaacaaaacgatgtttcactgagaccgataaa 15507824  T

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