View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_high_16 (Length: 287)
Name: NF8591_high_16
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 417038 - 416794
Alignment:
| Q |
17 |
agtttttgtatgacctctcccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacctgtaattaaatatcaggggtt |
116 |
Q |
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| T |
417038 |
agtttttgtatgacctctcccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacctgtaattaaatatcaggggtt |
416939 |
T |
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| Q |
117 |
acaatttaacaagcaacaataaaatccttcataataaataagaggatctataatagaagtgtgagagctcaccaatgacccataatttttccatctggtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
416938 |
acaatttaacaagcaacaataaaatccttcataataaataagaggatctataatagaagtgtgagagctcaccaatgacccataatttttccatctggtc |
416839 |
T |
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| Q |
217 |
caggactaaatgtgattaaattgccagcatacttatgaccaccaa |
261 |
Q |
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| T |
416838 |
catgactaaatgtgattaaattgccagcatacttatgaccaccaa |
416794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 405956 - 405865
Alignment:
| Q |
17 |
agtttttgtatgacctctcccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacctgtaattaaatat |
108 |
Q |
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| T |
405956 |
agtttttgtatgacctctcccttggcaatatgttgatccagcaaggcaggcacatcattaggagtaacatagccatacatgtaattaaatat |
405865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 398183 - 398252
Alignment:
| Q |
39 |
tggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacctgtaattaaatat |
108 |
Q |
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| T |
398183 |
tggcaatgtgttgatccagcaaggcagacacatcattaggagtaacataaccatacatgtaattaaatat |
398252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 405656 - 405595
Alignment:
| Q |
152 |
aaataagaggatctataatagaagtgtgagagctcaccaatgacccataatttttccatctg |
213 |
Q |
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| T |
405656 |
aaataagaggatgaataaaacaactgtgagagtttaccaatgacccataatttttccatctg |
405595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 22513739 - 22513813
Alignment:
| Q |
187 |
accaatgacccataatttttccatctggtccaggactaaatgtgattaaattgccagcatacttatgaccaccaa |
261 |
Q |
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| T |
22513739 |
accaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttatgaccaccaa |
22513813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 22513682 - 22513741
Alignment:
| Q |
36 |
ccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacc |
95 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
22513682 |
ccttggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacatagccatacc |
22513741 |
T |
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