View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_high_24 (Length: 208)
Name: NF8591_high_24
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 2090043 - 2089867
Alignment:
| Q |
16 |
tgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttttgata |
115 |
Q |
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| T |
2090043 |
tgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttttgata |
2089944 |
T |
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| Q |
116 |
attgtcaaagggagataaatctaaaagatggcaagatcttattggtctcatttagaggtgtaaattttgtttgtttt |
192 |
Q |
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| T |
2089943 |
attgtcaaagggagataaatctaaaagatggcaagatcttattggtctcatttagaggtgtaaattttgtttgtttt |
2089867 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 2879303 - 2879380
Alignment:
| Q |
28 |
tatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgt |
105 |
Q |
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|||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||| ||||||| |||| |
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| T |
2879303 |
tatttagtgaaaattaaagttgatcctcaggagaatgtttcggatcaagctgaggtaataacactacatcctggttgt |
2879380 |
T |
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