View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8591_high_4 (Length: 425)
Name: NF8591_high_4
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_high_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 1341366 - 1341774
Alignment:
| Q |
1 |
tcaggagaaatttgtacaatgttaactttcctaactaaacaatctaaaggatttccatcttttacatcagatatgaaaatcctctttttgtcaaccagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1341366 |
tcaggagaaatttgtacaatgttaactttcctaactaaacaatctaaaggattttcatcttttacatcagatatgaaaatcctctttttgtcaaccagat |
1341465 |
T |
|
| Q |
101 |
tcccatggtccttaatcacctgcacacacattcaaatcaccaaaatcaacaataaccctaaacagctaaacaaaccaaaacacgaaagagttacaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1341466 |
tcccatggtccttaatcacctgcacacacattcaaatcaccaaaatcaacaataaccctaaacagctaaacaaaccaaaacacgaaagagttacaattca |
1341565 |
T |
|
| Q |
201 |
atctttaccgtgtcttcggctctgtaaaaccatcgggcagtaaaatattgttcttcatcaggagtttcaaacatctccacaatcctagcaatgtaatctt |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
1341566 |
atctttactgtgtcttcggctctgtaaaaccattgggcagtaaaatattgttcttcatcaggagtttcaaacatctccacaatcctagcaatgtaatcct |
1341665 |
T |
|
| Q |
301 |
cctttccttcctccccctaaacaacattcattacatcaacacagtaagatcaaaactcaaatgaattgaaatcaataattaaaatgttttaacataacat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1341666 |
cctttccttcctccccctaaacaacattcatcacatcaacacagtaagatcaaaactcaaatgaattgaaatcaataaataaaatgttttaacataacat |
1341765 |
T |
|
| Q |
401 |
aaagaaatg |
409 |
Q |
| |
|
||||||||| |
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|
| T |
1341766 |
aaagaaatg |
1341774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 31943178 - 31943538
Alignment:
| Q |
1 |
tcaggagaaatttgtacaatgttaactttcctaactaaacaatctaaaggatttccatcttttacatcagatatgaaaatcctctttttgtcaaccagat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
31943178 |
tcaggagaaatttgtacaatgtttactttcctaactaaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaactagat |
31943277 |
T |
|
| Q |
101 |
tcccatggtccttaatcacctgcacacacattcaaatcaccaaaatcaacaataaccctaaacagctaaacaaaccaaaacacgaaagagttacaattca |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
31943278 |
taccatggtccttaatcacctgcacacacattcaaatcaccaaaatcaacaataaccctaaacagctaaacaaaccaaaacacaaaagagttaaaattca |
31943377 |
T |
|
| Q |
201 |
atctttaccgtgtcttcggctctgtaaaaccatcgggcagtaaaatattgttcttcatcaggagtttcaaacatctccacaatcctagcaatgtaatctt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
31943378 |
atctttaccgtgtcttcggctctataaaaccattgggcagtaaaatattgttcttcatcaggagtttcaaacaactccacaatcctagcaatgtaatcct |
31943477 |
T |
|
| Q |
301 |
cctttccttcctccccctaaacaacattcattacatcaacacagtaagatcaaaactcaaa |
361 |
Q |
| |
|
| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
31943478 |
cttttccttcctccccctaaacaacattcatcaaatcaacacagtaagatcaaaactcaaa |
31943538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 31943610 - 31943658
Alignment:
| Q |
361 |
atgaattgaaatcaataattaaaatgttttaacataacataaagaaatg |
409 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
31943610 |
atgaattaaaatcaataataaaaatattttaacatgacataaagaaatg |
31943658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 9393546 - 9393868
Alignment:
| Q |
1 |
tcaggagaaatttgtacaatgttaactttcctaactaaacaatctaaaggatttccatcttttacatcagatatgaaaatcctctttttgtcaaccagat |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
9393546 |
tcaggagaaatttgtacaatgtttattttcctaactaaacaatctaaaggattttcatcttttacatcagatttgaaaattctctttttgtcaactagat |
9393645 |
T |
|
| Q |
101 |
tcccatggtccttaatcacctgcacacacattcaaatcaccaaaatcaacaataaccctaaacagctaaacaaa-ccaaaacacgaaagagttacaattc |
199 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
9393646 |
tcccatggtccttaatcacctgcacacgcattcatatcaccaaaatcaacaataaccctaaacagctaaacaaacccaaaacac--aagagttaaaattc |
9393743 |
T |
|
| Q |
200 |
aatctttaccgtgtcttcggctctgtaaaaccatcgggcagtaaaatattgttcttcatcaggagtttcaaacatctccacaatcctagcaatgtaatct |
299 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
9393744 |
aatatttacggtgtcttcggctctgtaaaaccattgggcagtaaaatattgttcttcctcaggagtttcaaacatctccacaatcgtagcgatgtaatcc |
9393843 |
T |
|
| Q |
300 |
tcctttccttcctccccctaaacaa |
324 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
9393844 |
tcttttccttcctccccctaaacaa |
9393868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5643440 - 5643687
Alignment:
| Q |
1 |
tcaggagaaatttgtacaatgttaactttcctaactaaacaatctaaaggatttccatcttttacatcagatatgaaaatcctctttttgtcaaccagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| | ||| ||| ||||||| ||||||||| |||||||||| |||| |||| |||| |
|
|
| T |
5643440 |
tcaggagaaatttgtacaatgttaactttcttaactaaacaatcaagagggttttcatctttcacatcagatttgaaaatccttttttcatcaatgagat |
5643539 |
T |
|
| Q |
101 |
tcccatggtccttaatcacctgcacacacattcaaatcaccaaaatcaacaataaccctaaacagctaaac-aaaccaaaacacgaaagagttacaattc |
199 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||| | || ||||| |
|
|
| T |
5643540 |
ccccatggttcttgataacctgcacacacattcaaatcacaaaaatcaacaataaccctaaacatataaacaaaaccaaagcacgaatcaaataaaattc |
5643639 |
T |
|
| Q |
200 |
aatctttaccgtgtcttcggctctgtaaaaccatcgggcagtaaaata |
247 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
5643640 |
aatctttaccgtatcttcagctctgtaaaaccactgagcagtaaaata |
5643687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 46630495 - 46630644
Alignment:
| Q |
25 |
actttcctaactaaacaatctaaaggatttccatcttttacatcagatatgaaaatcctctttttgtcaaccagattcccatggtccttaatcacctgca |
124 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
46630495 |
actttcttaactaaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaaacagattcccgtggtccttgatcacctgca |
46630594 |
T |
|
| Q |
125 |
cacacattcaaatcaccaaaatcaacaataaccctaaacagctaaacaaa |
174 |
Q |
| |
|
||| ||||||||||||||||| || |||||| ||||||| |||||||| |
|
|
| T |
46630595 |
cacgtattcaaatcaccaaaataaaaaataacgctaaacatttaaacaaa |
46630644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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