View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_high_5 (Length: 409)
Name: NF8591_high_5
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 49943308 - 49943699
Alignment:
| Q |
1 |
tcagaatctagcaaatgcagtaaaagc-tgtgcaacttaagtaagatattgtgcagttaaactaacagaaatcacaacttcatttgttatatcaggactt |
99 |
Q |
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| T |
49943308 |
tcagaatctagcaaatgcagtaaaagcgtgtgcaacttaagtaagatattgtgcagttaaactaacagaaatcacaacttcatttgttatttcaggactt |
49943407 |
T |
|
| Q |
100 |
gaagtgagaactatgatactaaataacattttagaatctaaactcataggcagttgaagttatacggtttcaaataaaaagcgaagggaaagaataaaga |
199 |
Q |
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| T |
49943408 |
gaagtgagaactatgatactaaataacattttagaatctaaactcataggcagttgaagttatgcggtttcaaataaaaagcgaagggaaagaataaaga |
49943507 |
T |
|
| Q |
200 |
ctttgaaatataattttgtttcagatttcatattcagaatgattaagtaagagttgataatagttctgacctaacttcactatctccagatgcaagtagc |
299 |
Q |
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| T |
49943508 |
ctttgaaatataattttgtttcagatttcatattcagaatgattaagtaataggtgataatagttctcacctaacttcactatctccatatgcaagtagc |
49943607 |
T |
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| Q |
300 |
atcacagttgcccctctgaaatgaacagaatccaacataacgggaagagtacttctgacgtcttcaggctgcagagcatctaccccatctac |
391 |
Q |
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| T |
49943608 |
atcacagttgcccctctgaaatgaacagaatccaacataacgggaagagtacttgtgaggtcttcaggctgcagagcatctaccccatctac |
49943699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 1904801 - 1904744
Alignment:
| Q |
289 |
atgcaagtagcatcacagttgcccctctgaaatgaacagaatccaacataacgggaag |
346 |
Q |
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| T |
1904801 |
atgcaagtagcatcaccgttgcacctttgaaatgaacagaatccaatataacaggaag |
1904744 |
T |
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