View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8591_high_8 (Length: 350)

Name: NF8591_high_8
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8591_high_8
NF8591_high_8
[»] scaffold0155 (1 HSPs)
scaffold0155 (16-339)||(434-757)
[»] chr4 (3 HSPs)
chr4 (16-321)||(42390193-42390498)
chr4 (31-332)||(42394551-42394849)
chr4 (85-326)||(42378642-42378883)


Alignment Details
Target: scaffold0155 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 757 - 434
Alignment:
Q  16 aacacaaaataggcaaataacaccatcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  757 aacacaaaataggcaaataacaccatcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgataccacaacac 658  T
Q  116 tcctcatcacactcttaacaatttccacaatcatttgatacttatatatcttcttcttcaaatcaaagtcacagaacctacccccagggccgccatgcct 215  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| || |||||||||| |||||||||  ||||    
T  657 tcctcatcacactcttaacaatttccacaatcatttagtacttatatatcttcttcttcaaatcaaagtcccataacctacccctagggccgccgggcct 558  T
Q  216 tcctatcttcggtaacctcctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggt 315  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  557 tcctatcttcggtaacctcctatctctcgatcctgaactccacacttacttcgtcgggctagcccaaacccacggcccaattttcaagctcaggcttggt 458  T
Q  316 agcaaactcggcatcgtcataact 339  Q
    ||||||||||| ||||||||||||    
T  457 agcaaactcggtatcgtcataact 434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 42390498 - 42390193
Alignment:
Q  16 aacacaaaataggcaaataacaccatcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42390498 aacacaaaataggcaaataacaccatcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacac 42390399  T
Q  116 tcctcatcacactcttaacaatttccacaatcatttgatacttatatatcttcttcttcaaatcaaagtcacagaacctacccccagggccgccatgcct 215  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  ||||    
T  42390398 tcctcatcacactcttaacaatttccacaatcctttggtacttatatatcttcttcttcaaatcaaagtcccagaacctaccccaagggccgccgggcct 42390299  T
Q  216 tcctatcttcggtaacctcctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggt 315  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||    
T  42390298 tcctatcttcggtaacctcctatctctcgatcccgaactccacacttacttcgcctggctagcccaagcccacggcccaattttcaagctcaggcttggt 42390199  T
Q  316 agcaaa 321  Q
    ||||||    
T  42390198 agcaaa 42390193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 31 - 332
Target Start/End: Complemental strand, 42394849 - 42394551
Alignment:
Q  31 aataacaccatcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaatcctcatcacactct 130  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||      ||||||||||||||||  |||||||||||||| | |||||  ||||||    
T  42394849 aataacgccatcatgattccactcacattttctttgttcaaaaaca------tgaaagattggtacaactgtgacaccacaacactactcataccactct 42394756  T
Q  131 taacaatttccacaatcatttgatacttatatatcttcttcttcaaatcaaagtcacagaacc---tacccccagggccgccatgccttcctatcttcgg 227  Q
    |||| ||||||||||||||||| ||  | ||| ||| |||||||||||||||  | || |||    |||| ||||| ||| |  ||||||||||  ||||    
T  42394755 taaccatttccacaatcatttggtatatgtatctctacttcttcaaatcaaaaccccaaaacaacttaccaccaggcccgtcgggccttcctattatcgg 42394656  T
Q  228 taacctcctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggtagcaaactcggc 327  Q
    |||||| ||||| ||||| || || || ||||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  42394655 taaccttctatcactcgagccagagcttcacacttacttcaccggcctagcccaagcccacggcccaattttcaagctcaggcttggtagcaaacttggc 42394556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 85 - 326
Target Start/End: Complemental strand, 42378883 - 42378642
Alignment:
Q  85 aaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatttccacaatcatttgatacttatatatcttcttcttcaaatcaaagt 184  Q
    ||||||||||||||||||||||| |||||| |||||||  |||||||||||||||||| ||||| ||| ||||||||| ||| |||||||||||| ||      
T  42378883 aaagattggtacaaaggtgacacaacaacactcctcatagcactcttaacaatttccataatcacttggtacttatatctctacttcttcaaatctaaaa 42378784  T
Q  185 cacagaacctacccccagggccgccatgccttcctatcttcggtaacctcctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagc 284  Q
    | || |||||||| ||||| || ||  || |||| |||||||| ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||||||    
T  42378783 cccaaaacctaccaccaggcccaccgggctttcccatcttcggaaaccttctatcactcgacccagaacttcacacttacttcgccggactagcccaagc 42378684  T
Q  285 ccacagcccaattttcaagctcaggcttggtagcaaactcgg 326  Q
    |||| ||||||||| ||||||| |||| || |||||||||||    
T  42378683 ccacggcccaatttacaagctctggctcggaagcaaactcgg 42378642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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