View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_14 (Length: 344)
Name: NF8591_low_14
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 44353590 - 44353812
Alignment:
| Q |
8 |
ttggtgttgcagtgattgaatataattgattatctcatatagcatgagtgctttaccaattacctaaacaatnnnnnnnn------catagaaacaataa |
101 |
Q |
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| T |
44353590 |
ttggtgttgcagtgattgaatataattgattatctcatatagcatgagtgttttaccaattacctaaacaataaaaaaaaaaaaaacatagaaacaataa |
44353689 |
T |
|
| Q |
102 |
caattcaatgcaaatgatagaatataagttagaagaaattattatgtttgccaacttgttatatccagggactaaatctttgagcatttttattctctca |
201 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||||| |
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| T |
44353690 |
caattcaatgcaaatgatagaatataagtcagaagaaactattatgtttgctaacttggtatatcgagggactaaatcttcgagcatttttattctctca |
44353789 |
T |
|
| Q |
202 |
ctaatcttttctcttccttcctg |
224 |
Q |
| |
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|||||||||||||||| |||||| |
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| T |
44353790 |
ctaatcttttctcttctttcctg |
44353812 |
T |
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