View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_15 (Length: 331)
Name: NF8591_low_15
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 156 - 287
Target Start/End: Complemental strand, 11351098 - 11350967
Alignment:
| Q |
156 |
tgtagcacatatatatagattaaaagtgtatttggtgtctgatacatgtcggattcaatcatgacaccgacacatgtagttaagggtgatactcaatctc |
255 |
Q |
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| T |
11351098 |
tgtagcacatatatatagattaaaagtgtatttggtgtctgatacatgtcggattcaatcatgacaccgacacatgtagttaatggttatactcaatcac |
11350999 |
T |
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| Q |
256 |
tttaattttctaaaactctttattgtgtctat |
287 |
Q |
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| T |
11350998 |
tttaattttctaaaactctttattgtgtctat |
11350967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 11351242 - 11351156
Alignment:
| Q |
13 |
caccaacaccaacatcaccgcctaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccataaaacccatcgctcgct |
99 |
Q |
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| T |
11351242 |
caccaacaccaacatcaccgcctaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccataaaacccatcgctcgct |
11351156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 42638310 - 42638397
Alignment:
| Q |
13 |
caccaacaccaacatcaccgcctaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccataaa-acccatcgctcgct |
99 |
Q |
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| T |
42638310 |
caccaacatcaacgtcaccgcgtaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccataaacaccaatcgctcgct |
42638397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 20720141 - 20720072
Alignment:
| Q |
15 |
ccaacaccaacatcaccgcctaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccataaa |
85 |
Q |
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| T |
20720141 |
ccaacaccaacatcaccgcctaaatcaaaactccgttgc-aagcgactactgaaaaacaaaagtccataaa |
20720072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 5934030 - 5933959
Alignment:
| Q |
13 |
caccaacaccaacatcaccgcctaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccataaa |
85 |
Q |
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| T |
5934030 |
caccaataccaacatcaccacttaaattaaaactgaattgcaaaacaaccgcag-aaaaacaaaatccataaa |
5933959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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