View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8591_low_16 (Length: 327)

Name: NF8591_low_16
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8591_low_16
NF8591_low_16
[»] chr7 (1 HSPs)
chr7 (18-314)||(35831402-35831698)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 35831698 - 35831402
Alignment:
Q  18 catttaaggtccaaatactaacttgaaaattaaaaataattatactcgagaatatctaaatatggtaaatcgtgttcgaaaaagcgaatccaaacatgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35831698 catttaaggtccaaatactaacttgaaaattaaaaataattatactcgagaatatctaaatatggtaaatcgtgttcgaaaaagcgaatccaaacatgta 35831599  T
Q  118 caaattgaaggcataaaatttgacaagctaagactagatagatacctagtttggttgacagggtaaatgagtatgggaccattacttgtgtccttgagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35831598 caaattgaaggcataaaatttgacaagctaagactagatagatacctagtttggttgacagggtaaatgagtatgggaccattacttgtgtccttgagaa 35831499  T
Q  218 tattgccatacacttctttagcaaagacatgaatctcactccttgggatcagaaggttcagccaaggatggtgaacttcccataagccttgtgctct 314  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35831498 tattgccaaacacttctttagcaaagtcatgaatctcactccttgggatcagaaggttcagccaaggatggtgaacttcccataagccttgtgctct 35831402  T

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