View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_19 (Length: 307)
Name: NF8591_low_19
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 15508109 - 15507824
Alignment:
| Q |
1 |
acaatcaaggtcgttaaaaacaaaaagaatgaatgtgcaaataagttctatactcaagttaatagcataaaaacagtaaaatgcatataattgtgacaaa |
100 |
Q |
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| T |
15508109 |
acaatcaag-tcgctaaaaacaaaaagaatgaatgtgcaaataagttctacattcaagttaataacataaaa-cagtaaaatgcatataattgtgacaaa |
15508012 |
T |
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| Q |
101 |
aattagagtgatcagaatactcatacattcatatttgtatattgaggtctaaatcatttatttattctataaatagattgaatttgatgtgtcaatttaa |
200 |
Q |
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| T |
15508011 |
a-ttagagtgatcagaatactcatacattcatatttgtatattgaggtctaaatcatttatttattctataa-tagattgaatttaatgtgtcaatttaa |
15507914 |
T |
|
| Q |
201 |
atcaaacgaacaccctaacaaaccataaaactaaataatttctcatcatcaagataacaaacaaaacgatgtttcactgagactgataaa |
290 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15507913 |
atcaaacgaacaccctaacaagatataaaactaaataatttctcatcatcaagataacaaacaaaacgatgtttcactgagaccgataaa |
15507824 |
T |
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