View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8591_low_2 (Length: 609)
Name: NF8591_low_2
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 51855544 - 51854945
Alignment:
| Q |
1 |
tgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtacatatcacaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855544 |
tgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtacatatcacaaaatt |
51855445 |
T |
|
| Q |
101 |
atcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
51855444 |
atcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagatcagatctagcaagttattggacaaacttaattctgttta |
51855345 |
T |
|
| Q |
201 |
atgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggag |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51855344 |
atgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttcttttgtttttatcttaacttgcagctcaagaacaattttggat |
51855245 |
T |
|
| Q |
301 |
aagtatttgaaacctgcagtctctaatgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacact |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51855244 |
aagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacact |
51855145 |
T |
|
| Q |
401 |
atactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
51855144 |
atactgatgctctatttaggagtcatgaagaaagacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctgg |
51855045 |
T |
|
| Q |
501 |
ttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacacta--ctacactagcttttgttgc---tgttaatcaaattggtggtgatg |
595 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51855044 |
ttgaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacactaccctacactagcttttgttgctgttgttaatcaaattggtggtgatg |
51854945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 35042937 - 35043384
Alignment:
| Q |
1 |
tgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtacatatcacaaaatt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35042937 |
tgctctgcttctggatggcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtacatatcacaaaatt |
35043036 |
T |
|
| Q |
101 |
atcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgttta |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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|
| T |
35043037 |
atcaaagtaatgaagaggtttcggatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacaaactgaattctgttta |
35043136 |
T |
|
| Q |
201 |
atgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggag |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35043137 |
atgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctcctgtttttatcttaacttgcagctcaagaacaattttggag |
35043236 |
T |
|
| Q |
301 |
aagtatttgaaacctgcagtctctaatgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacact |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
35043237 |
aagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcaaactcattttcatcttgcacact |
35043336 |
T |
|
| Q |
401 |
atactgatgctctatttaggagtcatgaagaaaggcttgattctaatg |
448 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
35043337 |
atactgatgctctatttaggagccatgaagaaagacttaattctaatg |
35043384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 102 - 595
Target Start/End: Complemental strand, 8944678 - 8944180
Alignment:
| Q |
102 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
8944678 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatgtagcaagttattggacaaacttaattctgtttaa |
8944579 |
T |
|
| Q |
202 |
tgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaga |
301 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944578 |
tgtttaaataatggatgctcccctgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaga |
8944479 |
T |
|
| Q |
302 |
agtatttgaaacctgcagtctctaatgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacacta |
401 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8944478 |
agtatttgaaacctacagtttctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtaatacccattttcatcttgcacacta |
8944379 |
T |
|
| Q |
402 |
tactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8944378 |
tactgatgctctatttaggagtcatgaagaaatacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggt |
8944279 |
T |
|
| Q |
502 |
tgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacact--actacactagcttttgttgc---tgttaatcaaattggtggtgatg |
595 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8944278 |
tgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgttgctgttgttaatcaaattggtggtgatg |
8944180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 1869643 - 1869515
Alignment:
| Q |
1 |
tgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtacatatcac--aaaa |
98 |
Q |
| |
|
||||||| ||| |||| |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||| || | |
|
|
| T |
1869643 |
tgctctggttccggatggcagattgaagaagcaaaacttttttgtgctcaaggtcaaaatgaaatggctatcaaccttaggatgtacatatcaccaaata |
1869544 |
T |
|
| Q |
99 |
ttatcaaagtaatgaagaggtttcagatg |
127 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
1869543 |
ttatcaaagtaatgaagagacttcagatg |
1869515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8944731 - 8944674
Alignment:
| Q |
1 |
tgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaa |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944731 |
tgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaa |
8944674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 124 - 595
Target Start/End: Original strand, 26887003 - 26887479
Alignment:
| Q |
124 |
gatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaatgtttcaataatggatgctccc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26887003 |
gatgtatatcgcttgattgggaagtggccggcagagaccagatctagcaagttattggacaaacttaattctgtttaatgtttaaataatggatgctccc |
26887102 |
T |
|
| Q |
224 |
ttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggagaagtatttgaaacctgcagtctc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26887103 |
ttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaaaagtatttgaaacctgcagtctc |
26887202 |
T |
|
| Q |
324 |
taatgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagt |
423 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887203 |
tattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagt |
26887302 |
T |
|
| Q |
424 |
catgaagaaaggcttgattctaatggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatgg |
523 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887303 |
catgaagaaagacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatgg |
26887402 |
T |
|
| Q |
524 |
tcatgtcacatgctacttcaatagacact--actacactagcttttgttgc---tgttaatcaaattggtggtgatg |
595 |
Q |
| |
|
||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26887403 |
tcatggcgcatgctacttcaatagacactacactacactagcttttgttgctgttgttaatcaaattggtggtgatg |
26887479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 446 - 595
Target Start/End: Complemental strand, 21989075 - 21988923
Alignment:
| Q |
446 |
atggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaat |
545 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| | |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
21989075 |
atggtggaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagc |
21988976 |
T |
|
| Q |
546 |
agacactactacactagcttttgttgc---tgttaatcaaattggtggtgatg |
595 |
Q |
| |
|
|||||||| |||||| |||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
21988975 |
ggacactacgacactaactttagttgctgttgttaatcaaactggtggtgatg |
21988923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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