View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8591_low_25 (Length: 281)

Name: NF8591_low_25
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8591_low_25
NF8591_low_25
[»] chr5 (4 HSPs)
chr5 (1-261)||(18606882-18607142)
chr5 (1-43)||(26205763-26205805)
chr5 (160-201)||(18586123-18586164)
chr5 (4-44)||(37472599-37472639)
[»] chr3 (5 HSPs)
chr3 (1-64)||(52369789-52369852)
chr3 (1-49)||(12704654-12704702)
chr3 (1-33)||(12987752-12987784)
chr3 (1-46)||(3730165-3730210)
chr3 (1-49)||(7931595-7931643)
[»] chr4 (5 HSPs)
chr4 (1-64)||(31243530-31243593)
chr4 (1-43)||(19230312-19230354)
chr4 (1-49)||(20743275-20743323)
chr4 (1-29)||(23915143-23915171)
chr4 (1-49)||(24343521-24343569)
[»] chr6 (3 HSPs)
chr6 (1-49)||(34446579-34446627)
chr6 (4-44)||(12235521-12235561)
chr6 (1-29)||(15443709-15443737)
[»] chr8 (4 HSPs)
chr8 (1-39)||(8798838-8798876)
chr8 (1-38)||(3508066-3508103)
chr8 (1-33)||(37225756-37225788)
chr8 (1-49)||(40063965-40064013)
[»] chr1 (2 HSPs)
chr1 (3-49)||(6936397-6936443)
chr1 (1-43)||(11634127-11634169)
[»] chr7 (2 HSPs)
chr7 (1-49)||(5938486-5938534)
chr7 (1-49)||(23930233-23930281)
[»] chr2 (2 HSPs)
chr2 (1-49)||(11308001-11308049)
chr2 (1-49)||(25544495-25544543)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 18607142 - 18606882
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacaccggaacacctctaatccgaggagtgtctgtattttata 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |    
T  18607142 tttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgttggtgtccgacaccggaacacctctagtccgaggagtgtctgtattttaca 18607043  T
Q  101 gtaataaattgagaaacttacatcaacgttgtatttctttgcaataccgtgccgatcaatggctgccataccagttctccactcaaaatcaatagagagt 200  Q
    |||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18607042 gtaataaattgagaaacttacatcaacgttggttttctttgcaatactgtgccgatcaatggctgccataccagttttccactcaaaatcaatagagagt 18606943  T
Q  201 gctatttggggatcttcagttttatccacaaaacatattacgtagtcaccactttgatatg 261  Q
    | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18606942 gatacgtggggatcttcagttttatccacaaaacatattacgtagtcaccactttgatatg 18606882  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26205805 - 26205763
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgt 43  Q
    ||||||||||| |||||||||| | ||||||||||||||||||    
T  26205805 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgt 26205763  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 18586164 - 18586123
Alignment:
Q  160 tggctgccataccagttctccactcaaaatcaatagagagtg 201  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||    
T  18586164 tggctgccacaccagttttccacacaaaatcaatagagagtg 18586123  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 37472639 - 37472599
Alignment:
Q  4 gagaaaataacataattcaatataatcataggtgtcgtgtc 44  Q
    |||||||| ||||||||| ||||||||||| ||||||||||    
T  37472639 gagaaaatgacataattcgatataatcatatgtgtcgtgtc 37472599  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52369789 - 52369852
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacaccg 64  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| |||| ||| || |||||||    
T  52369789 tttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccg 52369852  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12704702 - 12704654
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||| ||||    
T  12704702 tttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgt 12704654  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12987752 - 12987784
Alignment:
Q  1 tttgagaaaataacataattcaatataatcata 33  Q
    |||||||||||||||||||||||||||||||||    
T  12987752 tttgagaaaataacataattcaatataatcata 12987784  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3730210 - 3730165
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctg 46  Q
    ||||||| ||| |||||||||| | |||||||||||||||||||||    
T  3730210 tttgagataatgacataattcagtgtaatcataggtgtcgtgtctg 3730165  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7931643 - 7931595
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||||| |||||| ||||||| | |||| |||||||||||||||||||    
T  7931643 tttgagagaataacgtaattcagtgtaattataggtgtcgtgtctgtgt 7931595  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31243593 - 31243530
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgttggtttccgacaccg 64  Q
    ||||||||||| |||||||||| | |||||||||||||| |||| |||||||| || |||||||    
T  31243593 tttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccg 31243530  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19230354 - 19230312
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgt 43  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  19230354 tttgagaaaataacataattcaatgtaattataggtgtcgtgt 19230312  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20743323 - 20743275
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||||||||| |||||||||| | ||||||||||||| ||||| ||||    
T  20743323 tttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgt 20743275  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 23915143 - 23915171
Alignment:
Q  1 tttgagaaaataacataattcaatataat 29  Q
    |||||||||||||||||||||||||||||    
T  23915143 tttgagaaaataacataattcaatataat 23915171  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24343521 - 24343569
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||||||||| |||||||||| | |||| |||||||||||||| ||||    
T  24343521 tttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgt 24343569  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34446579 - 34446627
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||||||||| |||||||||| | ||||||||||||||||||| ||||    
T  34446579 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgt 34446627  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 12235561 - 12235521
Alignment:
Q  4 gagaaaataacataattcaatataatcataggtgtcgtgtc 44  Q
    |||||||| |||||||||| | |||||||||||||||||||    
T  12235561 gagaaaatgacataattcagtgtaatcataggtgtcgtgtc 12235521  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15443709 - 15443737
Alignment:
Q  1 tttgagaaaataacataattcaatataat 29  Q
    |||||||||||||||||||||||||||||    
T  15443709 tttgagaaaataacataattcaatataat 15443737  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8798876 - 8798838
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtc 39  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  8798876 tttgagaaaataacataattcaatataattatatgtgtc 8798838  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3508066 - 3508103
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgt 38  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  3508066 tttgagaaaataacataattcaatgtaatcatatgtgt 3508103  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37225788 - 37225756
Alignment:
Q  1 tttgagaaaataacataattcaatataatcata 33  Q
    |||||||||||||||||||||||| ||||||||    
T  37225788 tttgagaaaataacataattcaatgtaatcata 37225756  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40063965 - 40064013
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||||||||| |||||||||| | |||||||||| |||||||| ||||    
T  40063965 tttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgt 40064013  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 6936443 - 6936397
Alignment:
Q  3 tgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||||||| |||||||| | | ||||||||||||||||||||||||    
T  6936443 tgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgt 6936397  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11634169 - 11634127
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgt 43  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||    
T  11634169 tttgagaaaacaacataatttaatgtaatcataggtgtcgtgt 11634127  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5938486 - 5938534
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||| |||||||||||||||| |||||| |||||||| ||||| ||||    
T  5938486 tttgataaaataacataattcagtataattataggtgttgtgtcggtgt 5938534  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23930233 - 23930281
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||||||||| |||||||||| | ||||||||||||| ||||| ||||    
T  23930233 tttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgt 23930281  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11308049 - 11308001
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||| ||||| |||||||||| | ||||||||||||||||||| ||||    
T  11308049 tttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgt 11308001  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25544495 - 25544543
Alignment:
Q  1 tttgagaaaataacataattcaatataatcataggtgtcgtgtctgtgt 49  Q
    ||||||||||| | |||||||| | ||||||||||||||||||| ||||    
T  25544495 tttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgt 25544543  T

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