View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_28 (Length: 270)
Name: NF8591_low_28
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 504832 - 505082
Alignment:
| Q |
15 |
agtaacatgtagcatctacactgcggtacaaataccagacacgatactgacattgatacgttgacaacagtaataatttgagaaaatagaacgattgaat |
114 |
Q |
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| T |
504832 |
agtaatatgtagcatctacactgcggtacaaataccagacatgatactgacattgatacgttgacaacagtaataatttgagaaaatagaacgattgaat |
504931 |
T |
|
| Q |
115 |
gcaatatgtttcaatgttgtattcaatgtcgaacaatgacacatttccgacactttccttcagtatgacgtatcaggtgctgcataggtaccaacgcttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
504932 |
gcaatatgtttcaatgttgtattcaatgtcgaacaatgacacatttccgacactttccttcagtatgacgtatcaggtgctgcataggtaccaacgcttc |
505031 |
T |
|
| Q |
215 |
atgttgaaggcgtgtctggtatccaacacgtgttggtatttaacaccaaac |
265 |
Q |
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||||||||||||||||||||||||| |||| |||||||||| ||||||||| |
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| T |
505032 |
atgttgaaggcgtgtctggtatccagcacgcgttggtatttgacaccaaac |
505082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 13076151 - 13076102
Alignment:
| Q |
70 |
atacgttgacaacagtaataatttgagaaaatagaacgattgaatgcaat |
119 |
Q |
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| T |
13076151 |
atacgttgacatcaataataatttgagaaaatgaaacaattgaatgcaat |
13076102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 44412357 - 44412389
Alignment:
| Q |
82 |
cagtaataatttgagaaaatagaacgattgaat |
114 |
Q |
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| T |
44412357 |
cagtaataatttgagaaaatagaatgattgaat |
44412389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 13538285 - 13538334
Alignment:
| Q |
70 |
atacgttgacaacagtaataatttgagaaaatagaacgattgaatgcaat |
119 |
Q |
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||||||||||| || ||||||||||||||||| ||| |||||||||||| |
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| T |
13538285 |
atacgttgacatcaataataatttgagaaaatgaaacaattgaatgcaat |
13538334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 12826017 - 12826066
Alignment:
| Q |
70 |
atacgttgacaacagtaataatttgagaaaatagaacgattgaatgcaat |
119 |
Q |
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||||||||||| || ||||||||||||||||| ||| |||||||||||| |
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| T |
12826017 |
atacgttgacatcaataataatttgagaaaatgaaacaattgaatgcaat |
12826066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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