View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8591_low_29 (Length: 268)

Name: NF8591_low_29
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8591_low_29
NF8591_low_29
[»] chr4 (9 HSPs)
chr4 (128-247)||(55635043-55635161)
chr4 (130-233)||(54862405-54862508)
chr4 (130-233)||(54626843-54626946)
chr4 (145-197)||(50192336-50192388)
chr4 (128-248)||(55659576-55659696)
chr4 (128-233)||(55665808-55665913)
chr4 (130-194)||(51315717-51315781)
chr4 (128-194)||(52986670-52986736)
chr4 (130-194)||(3672109-3672173)
[»] chr2 (1 HSPs)
chr2 (130-194)||(13401227-13401291)
[»] chr8 (1 HSPs)
chr8 (130-194)||(9889327-9889391)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 55635043 - 55635161
Alignment:
Q  128 aagctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgggacaacaccaatgtttgtcaggctacttag 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  55635043 aagctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgggacaataccaatgtttgtcaggct-cttag 55635141  T
Q  228 ttcacccaacgaagatgttc 247  Q
    ||||||||||||||||||||    
T  55635142 ttcacccaacgaagatgttc 55635161  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 54862508 - 54862405
Alignment:
Q  130 gctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgggacaacaccaatgtttgtcaggctacttagtt 229  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||| ||  |||||| ||| ||| |||||||||||    
T  54862508 gctgcttgggcactcacaaacatagcatctggaacttcggagaacactaaggtggtaattgatcatggggcagtaccaatatttatcaagctacttagtt 54862409  T
Q  230 cacc 233  Q
    ||||    
T  54862408 cacc 54862405  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 54626843 - 54626946
Alignment:
Q  130 gctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgggacaacaccaatgtttgtcaggctacttagtt 229  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||| ||  ||  |||||||||||||| ||| |||||||    
T  54626843 gctgcttgggcactcacaaacatagcagctggaacttctgagaacactaaggtggtagttgatcatggcgcagtaccaatgtttgtcaagcttcttagtt 54626942  T
Q  230 cacc 233  Q
    ||||    
T  54626943 cacc 54626946  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 50192388 - 50192336
Alignment:
Q  145 acaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgg 197  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||||||||||    
T  50192388 acaaacatagcatctggaacttctgagaacactaaggtggtgattgatcacgg 50192336  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 55659696 - 55659576
Alignment:
Q  128 aagctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgggacaacaccaatgtttgtcaggctacttag 227  Q
    |||||||||||  |||||| ||| |||||   |||||||||| ||||| ||||||||| |||||||||||| |   ||||||  |||||| |||||||||    
T  55659696 aagctgcttggatactcacgaacgtagcaggtggaacttctgtgaacactaaggtggtcattgatcacggggctgtaccaatacttgtcaagctacttag 55659597  T
Q  228 ttcacccaacgaagatgttcg 248  Q
    |||||| | ||| ||||||||    
T  55659596 ttcacctagcgatgatgttcg 55659576  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 55665913 - 55665808
Alignment:
Q  128 aagctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatcacgggacaacaccaatgtttgtcaggctacttag 227  Q
    |||||||||||| | | || |||||| ||||||||||||| ||||| ||||||||| || | ||||| ||| ||  ||||||  |||||  |||||||||    
T  55665913 aagctgcttgggtagttacgaacatatcatccggaacttcagagaatattaaggtgctagtagatcatggggcagtaccaatacttgtcgagctacttag 55665814  T
Q  228 ttcacc 233  Q
    ||||||    
T  55665813 ttcacc 55665808  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 51315717 - 51315781
Alignment:
Q  130 gctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatca 194  Q
    |||||||  ||||| |||||||||||| | |||||||||||||||| |||| || ||||||||||    
T  51315717 gctgctttcgcacttacaaacatagcagctggaacttctgagaacactaagttgctaattgatca 51315781  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 52986736 - 52986670
Alignment:
Q  128 aagctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatca 194  Q
    ||||| ||| ||||||  ||||||||| | | ||||||||| |||||| ||||||||||||||||||    
T  52986736 aagctacttcggcactttcaaacatagtagctggaacttctaagaacactaaggtggtaattgatca 52986670  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 3672173 - 3672109
Alignment:
Q  130 gctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatca 194  Q
    |||||||||  |||| || ||||||||   |||||||||||||||| |||||| |||||||||||    
T  3672173 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatca 3672109  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 13401227 - 13401291
Alignment:
Q  130 gctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatca 194  Q
    ||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  13401227 gctgcttgggctcttacaaacatagcatccggaacttctgagaatactaaggtggtaattgatca 13401291  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 9889327 - 9889391
Alignment:
Q  130 gctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatca 194  Q
    |||||||||  |||| || ||||||||   |||||||||||||||| |||||| |||||||||||    
T  9889327 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatca 9889391  T

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