View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_31 (Length: 247)
Name: NF8591_low_31
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 45445378 - 45445519
Alignment:
| Q |
7 |
ggacatcagacacgacacagctaatgtcaaaagatatatatttatatgagaggagttaatatcatccattggactaaaatgtatgaacaagtttaaaaat |
106 |
Q |
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| T |
45445378 |
ggacaccagacacgacacagctaatgtcaaaagatatatatttatatgagaggagttaatatcatccattggactaaaatgtatgaacaagtttaaaaat |
45445477 |
T |
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| Q |
107 |
acttaagtgagtgtgctccacattccaatcaccctcgtcacc |
148 |
Q |
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| T |
45445478 |
acttaagtgagtgtgctccacattccaatcaccctcgtcacc |
45445519 |
T |
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Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 45445597 - 45445696
Alignment:
| Q |
148 |
cgattcacacactccttatattgttagctgcacgatttacacatgataaagaagctccaagaggcaaaggaacaatcattggatcaattaaagaggcaaa |
247 |
Q |
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| T |
45445597 |
cgattcacacactccttatattgttagctgcacgatttacacatgataaagaagctccaagaggcaaaggaacaatcattggatcaattaaagaggcaaa |
45445696 |
T |
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