View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8591_low_32 (Length: 242)

Name: NF8591_low_32
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8591_low_32
NF8591_low_32
[»] chr5 (3 HSPs)
chr5 (1-232)||(28532493-28532724)
chr5 (99-154)||(29021558-29021613)
chr5 (98-151)||(28673512-28673565)
[»] chr6 (2 HSPs)
chr6 (43-228)||(6588466-6588648)
chr6 (45-156)||(6416827-6416938)
[»] chr3 (4 HSPs)
chr3 (45-156)||(13469859-13469970)
chr3 (34-156)||(51763574-51763696)
chr3 (195-228)||(514011-514044)
chr3 (106-151)||(513925-513970)
[»] chr1 (2 HSPs)
chr1 (34-145)||(19467621-19467732)
chr1 (195-228)||(19467779-19467812)
[»] chr4 (6 HSPs)
chr4 (45-145)||(21833493-21833593)
chr4 (57-146)||(532589-532681)
chr4 (196-228)||(1601193-1601225)
chr4 (194-228)||(21833639-21833673)
chr4 (58-156)||(53761012-53761110)
chr4 (195-228)||(53761152-53761185)
[»] chr7 (1 HSPs)
chr7 (51-145)||(10615459-10615553)
[»] chr8 (1 HSPs)
chr8 (98-151)||(18314876-18314929)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 28532724 - 28532493
Alignment:
Q  1 ctatgatagagactcggactcgtagttataacaatgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccat 100  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28532724 ctatgatagagactcgaactcgtagttataacaatggggtagaggctctctcactttcacttcacaaactccgcaaggttaatctttcttcctttcccat 28532625  T
Q  101 caacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaacattgatggttataagcaattattaaccgatgcagtcattgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28532624 caacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaacattgatggttataagcaattattaaccgatgcaggcattgct 28532525  T
Q  201 tctgctctccgtgagagaccaacattgatgtc 232  Q
    |||||||||||||||||||| |||||||||||    
T  28532524 tctgctctccgtgagagaccgacattgatgtc 28532493  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 29021613 - 29021558
Alignment:
Q  99 atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt 154  Q
    |||||| |||||||||||||||||||  | | |||||||||||||||| |||||||    
T  29021613 atcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagt 29021558  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 28673512 - 28673565
Alignment:
Q  98 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 151  Q
    ||||||| |||||||||||||||| ||| | | |||||||||||||||| ||||    
T  28673512 catcaacgaccaatcacttttccatttgataaacaactgtaagcttctcgaaga 28673565  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 6588466 - 6588648
Alignment:
Q  43 aggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagct 142  Q
    |||||||||||||  ||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||||||    
T  6588466 aggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaattgtaagct 6588565  T
Q  143 tctccaagaagtcaacattgatggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagagaccaacattga 228  Q
    |||||| |||||||||||   ||||| |   |    ||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  6588566 tctccaggaagtcaacatatttggttgt---cgtgaattaaccaatgcaggcattgcttctgctctccgtgagagaccaaaattga 6588648  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 6416938 - 6416827
Alignment:
Q  45 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 144  Q
    ||||| |||||| ||||| | ||||||||||| ||||||||||||   |||||  | ||||||||||| |||||||| || |||  ||||||||||||||    
T  6416938 gctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagcttc 6416839  T
Q  145 tccaagaagtca 156  Q
    || |||||||||    
T  6416838 tcgaagaagtca 6416827  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 13469859 - 13469970
Alignment:
Q  45 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 144  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||||   ||||| || ||||||| ||||||||||||||| |||  ||||||||||||||    
T  13469859 gctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagcttc 13469958  T
Q  145 tccaagaagtca 156  Q
    || |||||||||    
T  13469959 tcgaagaagtca 13469970  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 51763574 - 51763696
Alignment:
Q  34 atgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaa 133  Q
    |||||||| | || || |||||| | ||| ||||||| || ||||||||| |||||  || |||||| ||||| ||||| ||||||||| |  |  ||||    
T  51763574 atgggatacaagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaa 51763673  T
Q  134 ctgtaagcttctccaagaagtca 156  Q
    |||||||||||||||||| ||||    
T  51763674 ctgtaagcttctccaagatgtca 51763696  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 514011 - 514044
Alignment:
Q  195 attgcttctgctctccgtgagagaccaacattga 228  Q
    ||||||||||||||||||||||||||||||||||    
T  514011 attgcttctgctctccgtgagagaccaacattga 514044  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 513925 - 513970
Alignment:
Q  106 accaatcacttttccacttgttcagcaactgtaagcttctccaaga 151  Q
    ||||||| ||||||||||||||||  |||||||||||||| |||||    
T  513925 accaatcgcttttccacttgttcaaaaactgtaagcttcttcaaga 513970  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 19467621 - 19467732
Alignment:
Q  34 atgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaa 133  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||| | | || ||||  |||| |||||||| | |||    
T  19467621 atggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaa 19467720  T
Q  134 ctgtaagcttct 145  Q
     |||||||||||    
T  19467721 ttgtaagcttct 19467732  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 19467779 - 19467812
Alignment:
Q  195 attgcttctgctctccgtgagagaccaacattga 228  Q
    |||||||||||| |||||||||||||||||||||    
T  19467779 attgcttctgctatccgtgagagaccaacattga 19467812  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 21833493 - 21833593
Alignment:
Q  45 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 144  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||  ||||||||| ||||| ||||| |||||||||||| | |  || ||||||||||    
T  21833493 gctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttcccataaacaatcaatctcttttccacttgctaaagaattgtaagcttc 21833592  T
Q  145 t 145  Q
    |    
T  21833593 t 21833593  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 532681 - 532589
Alignment:
Q  57 tcacttctcaaactccgcaaggttaatctttcttc-ctttcc--catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctc 146  Q
    |||||| |||||||||||||||||||||||||| | | |  |  ||||||| ||||||| ||||||||||||||||  || ||||||||||||    
T  532681 tcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttctc 532589  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 1601225 - 1601193
Alignment:
Q  196 ttgcttctgctctccgtgagagaccaacattga 228  Q
    |||||||||||||||||||||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattga 1601193  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 21833639 - 21833673
Alignment:
Q  194 cattgcttctgctctccgtgagagaccaacattga 228  Q
    ||||||||| |||||||||||||||||||||||||    
T  21833639 cattgcttcagctctccgtgagagaccaacattga 21833673  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 53761012 - 53761110
Alignment:
Q  58 cacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 156  Q
    ||||| |||||||||| |||||||||||||||  |||  |||| | | | |||||||||||||||||||| |  || ||||| ||||| ||||| ||||    
T  53761012 cacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtca 53761110  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 53761152 - 53761185
Alignment:
Q  195 attgcttctgctctccgtgagagaccaacattga 228  Q
    |||||||||||||||||||| |||||||||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattga 53761185  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 10615553 - 10615459
Alignment:
Q  51 tcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttct 145  Q
    |||||||||||| | ||||||||||||||||||||||||   |||| ||| ||||| ||||| ||| |||||||| ||  |||||||||||||||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttct 10615459  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 18314876 - 18314929
Alignment:
Q  98 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 151  Q
    ||||||| | ||||| ||||||||||||||||  ||||||||||||||| ||||    
T  18314876 catcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaaga 18314929  T

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