View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8591_low_33 (Length: 240)
Name: NF8591_low_33
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_33 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 7279403 - 7279638
Alignment:
| Q |
10 |
acatcataatcatcattagcaacataaataaatccataacaaaccaaaccaaca-----aggttgttagatgataaattaactaacctgtctaagtagaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7279403 |
acatcataatcatcattagcaacataaataaatctataacaaaccaaaccaacaaaacaaggttgttagatgataaactaactaacctgtctaagtagaa |
7279502 |
T |
|
| Q |
105 |
catgtctaacagcagagtcaatgtaatccttaacaggctggccagatgaaatcatatagccgtccttgaacttcatggacttggctctttgtgctctcaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||| || || ||||| || || ||||| |
|
|
| T |
7279503 |
catgtctaacagcagagtcaatgtaatccttaacaggctgtccggatgagatcatatacccatccttgaacttcatagatttagctctctgggccctcaa |
7279602 |
T |
|
| Q |
205 |
ttttccactaacaataacctcacagcccttggcacc |
240 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
7279603 |
ttttccactgacaataacctcacatcccttagcacc |
7279638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 16865703 - 16865538
Alignment:
| Q |
55 |
aaaccaacaaggttgttagatgataaattaactaacctgtctaagtagaacatgtctaacagcagagtcaatgtaatccttaacaggctggccagatgaa |
154 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| || || || ||||| ||| |
|
|
| T |
16865703 |
aaaccaataaggttcttagatgataag----ctaacctgtctaaggagaacatgtctcacagcagagtcaatgtagtccttgactggttgtccagaagaa |
16865608 |
T |
|
| Q |
155 |
atcatatagccgtccttgaacttcatggacttggctctttgtgctctcaattttccactaacaataacct |
224 |
Q |
| |
|
||||| || ||||| |||||||||||||| ||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
16865607 |
atcatgtaaccgtctttgaacttcatggatttggctctttgggccctcaattttccactgacaataacct |
16865538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 50356053 - 50356189
Alignment:
| Q |
88 |
aacctgtctaagtagaacatgtctaacagcagagtcaatgtaatccttaacaggctggccagatgaaatcatatagccgtccttgaacttcatggacttg |
187 |
Q |
| |
|
||||||||| || || ||||||||||| ||||| ||||||||||| || || ||||| ||||| |||| ||| | || | |||||||||||| || || |
|
|
| T |
50356053 |
aacctgtctgaggagcacatgtctaactgcagaatcaatgtaatctttcactggctgcccagaagaaagcatgtctccatgcttgaacttcattgattta |
50356152 |
T |
|
| Q |
188 |
gctctttgtgctctcaattttccactaacaataacct |
224 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||| |
|
|
| T |
50356153 |
gctctttgagccctcaattttccactgacaatgacct |
50356189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 18174220 - 18174441
Alignment:
| Q |
19 |
tcatcattagcaacataaataaatccataacaaaccaaaccaacaaggttgttagatgataaattaactaacctgtctaagtagaacatgtctaacagca |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18174220 |
tcatcattagcaacataaataaatacataacaaaccaaaccaataaggtttttagatgataaactaactaacctgtctaagaagaacatgtctaacagca |
18174319 |
T |
|
| Q |
119 |
gagtcaatgtaatccttaacaggctggccagatgaaatcatatagccgtccttgaacttcatggacttggctctttgtgctctcaattttccactaacaa |
218 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||||||| | ||| |||||||||||||| ||||| || || || ||||||||||| |||| |
|
|
| T |
18174320 |
gagtcaacgtaatccttaacaggttgtccagatgaaatcatatagttttgcttaaacttcatggacttagctctctgggcccttaattttccactgacaa |
18174419 |
T |
|
| Q |
219 |
taacctcacagcccttggcacc |
240 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
18174420 |
taacctcacaacccttagcacc |
18174441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 18225581 - 18225360
Alignment:
| Q |
19 |
tcatcattagcaacataaataaatccataacaaaccaaaccaacaaggttgttagatgataaattaactaacctgtctaagtagaacatgtctaacagca |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18225581 |
tcatcattagcaacataaataaatacataacaaaccaaaccaataaggtttttagatgataaactaactaacctgtctaagaagaacatgtctaacagca |
18225482 |
T |
|
| Q |
119 |
gagtcaatgtaatccttaacaggctggccagatgaaatcatatagccgtccttgaacttcatggacttggctctttgtgctctcaattttccactaacaa |
218 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||||||| | ||| |||||||||||||| ||||| || || || ||||||||||| |||| |
|
|
| T |
18225481 |
gagtcaacgtaatccttaacaggttgtccagatgaaatcatatagttttgcttaaacttcatggacttagctctctgggcccttaattttccactgacaa |
18225382 |
T |
|
| Q |
219 |
taacctcacagcccttggcacc |
240 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
18225381 |
taacctcacaacccttagcacc |
18225360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University