View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_34 (Length: 229)
Name: NF8591_low_34
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1772503 - 1772312
Alignment:
| Q |
1 |
cccaccttacagcatgatacttcttcaggacaaaagcaacctatatctgggtctgacacaaccacacgaaaaatcgaggttcctagcaataaggtatgtg |
100 |
Q |
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| T |
1772503 |
cccaccttacagcatgatacttcttcaggacaaaagcaacctatatctgggtctgacacaaccacacgaaaaatcgaggttcctagcaataaggtatgtg |
1772404 |
T |
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| Q |
101 |
tattctcttaggcttggatgtgtagtattgagctcaatcatgttgcatgcttactgtcaatcttggactttgtgtacaatcaaactcgacaatg |
194 |
Q |
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| T |
1772403 |
tattctcttaggcttggatgcgtagtattgagctcaatcatgttgcatgcctactgtcaatcttggac--tgtgtacaatcaaactggacaatg |
1772312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2525550 - 2525438
Alignment:
| Q |
1 |
cccaccttacagcatgatacttcttcaggacaaaagcaacctatatctgggtctgaca---caaccacacgaaaaatcgaggttcctagcaataaggtat |
97 |
Q |
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| T |
2525550 |
cccacctttcagcatgatgcttcttttggacaaaagcaacctatatccgggtctgacacaacaaccacacaagaaattgaggttcctagcaataaggtat |
2525451 |
T |
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| Q |
98 |
gtgtattctctta |
110 |
Q |
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| T |
2525450 |
gtacattctctta |
2525438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 2525080 - 2524993
Alignment:
| Q |
107 |
cttaggcttggatgtgtagtattgagctcaatcatgttgcatgcttactgtcaatcttggactttgtgtacaatcaaactcgacaatg |
194 |
Q |
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| T |
2525080 |
cttaggcttggatacgtgttattgggctcaatcatgtcggattcttattgtcaatcttgggctttgtgtacaatcaaactcgacaatg |
2524993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 2534388 - 2534486
Alignment:
| Q |
20 |
cttcttcaggacaaaagcaacctatatctgggtctgacacaa---ccacacgaaaaatcgaggttcctagcaataaggtatgtgtattctcttaggctt |
115 |
Q |
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| T |
2534388 |
cttcttctagacaaaatcaacctatatccggctctgacacaacaaccacacgagaaattgaggttcctagcaataaggtatatacattttcttaggctt |
2534486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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