View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_5 (Length: 476)
Name: NF8591_low_5
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 15 - 461
Target Start/End: Original strand, 41761072 - 41761518
Alignment:
| Q |
15 |
gacatcatgtgatttgcatttgatatggtatatcaaacataatatgaaaacactttaatctaattcatatttgttgtcgtttttctcaatggatgccata |
114 |
Q |
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| T |
41761072 |
gacatcatgtgatttgcatttgatatggtatatcaaacataatatgaaaacactttaatctaattcatatttgttgtccttcttctcaatggatgccata |
41761171 |
T |
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| Q |
115 |
caattatgcacttacgagtttactgttaatggctttttctttcacttccaactcaatggattgatatatttgagtttatgcatgcagaattacagatatt |
214 |
Q |
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| T |
41761172 |
caattatgcacttacgagtttactgttaatggcttttcctttcacttccaactcaatggattgatatatttgagtttatgcatgcagaattacagatatt |
41761271 |
T |
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| Q |
215 |
tgaacagagttgtgtatttttgtgctttcttctgttttatttgagttggttttgttttctgcatcaacagaaagtgaagaaattttccctagctgggcag |
314 |
Q |
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| T |
41761272 |
tgaacagagttgtgtatttttgtgctttcttctgttttatttgagttcgttttgttttctgcatcaacagaaagtgaagaaattttccctagctgggcag |
41761371 |
T |
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| Q |
315 |
gaacagcaggaaactaatccgagtagcaagaaggcttaattatgtattggtatcaaagctttccccgtcccttttaattcatagtttcatgtaacatcta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41761372 |
gaacagcaggaaactaatccgagtagcaagaaggcttaattatgtattggtatcaaagctttccccgtcccttttaattcatagtttcatgtaacatcta |
41761471 |
T |
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| Q |
415 |
ctcccattaacctccttcatttttaccattttgatctgttttgatgt |
461 |
Q |
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| T |
41761472 |
ctcccattaacctccttcatttttaccattttgatctgttttgatgt |
41761518 |
T |
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