View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_6 (Length: 462)
Name: NF8591_low_6
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 54268045 - 54267599
Alignment:
| Q |
1 |
tttgccaagataattagagacaaaaattttgagcgtgccatatgtaccgagataaagatacttatggccaaaagctttaccattccgtgccccccacctt |
100 |
Q |
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||||| |||||||||||||||||| ||||||| | | |||||||| ||||||||||||||||||| ||||||| |||| ||| |||||||| |||||||| |
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| T |
54268045 |
tttgctaagataattagagacaaagattttgaacttaccatatgttccgagataaagatacttattgccaaaaactttgccaatccgtgcctcccacctt |
54267946 |
T |
|
| Q |
101 |
ccgttatgatgatgtctagaacattaatggaaaagcaaattcattaaaccttaaattgattcttaattgagtnnnnnnnnttattcctcattacactctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
54267945 |
ccgttatgatgatgtctagaacattaatggaaaagcaaattcattaaaccttaaattgattcttaattgagtaaaaaaaattattcttcattacactctt |
54267846 |
T |
|
| Q |
201 |
gtccattcttaaatataaacaaaagttgatcaaagaaatttgatgtataagaagaactagctaatatataccttgctacacctctgtatttagatacacc |
300 |
Q |
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|| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54267845 |
gttcggtcttaaatataagcaaaaattgatcaaagaaatttgatgtataagaagaactagctaatatataccttgctacacctctgtatttagatacacc |
54267746 |
T |
|
| Q |
301 |
ccgtgaaaaaccactgctttttctgtaatttttagtaaaaataagctatgattaatatttgcaaattttttcttgctgatatatataatgaaagaaatta |
400 |
Q |
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| T |
54267745 |
ccgtgaaaaaccactgcttttcctgtaatttttagtaaaaataagctatgattaatatttgcaaattttttcatgctgatatatataatgaaagaaatta |
54267646 |
T |
|
| Q |
401 |
tgtttgattaataccttcttaaggatccaatatactcctcccttgat |
447 |
Q |
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| T |
54267645 |
tgtttgattaataccttcttaaggatccaatatactcctcccttgat |
54267599 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 25050858 - 25050806
Alignment:
| Q |
269 |
taccttgctacacctctgtatttagatacaccccgtgaaaaaccactgctttt |
321 |
Q |
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|||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| |
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| T |
25050858 |
taccttgcgacacccctgtatttagaaactccccgcgaaaaaccactgctttt |
25050806 |
T |
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