View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8591_low_9 (Length: 405)
Name: NF8591_low_9
Description: NF8591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8591_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Original strand, 38998144 - 38998519
Alignment:
| Q |
20 |
caagacaaaggcggtcgaagacatggattcctttatctgtcagcgttgcaacatcacataagatgggaagtaaatactccaacggcacaacaataagcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998144 |
caagacaaaggcggtcgaagacatggattcctttatctgtcagcgttgcaacatcacataagatgggaagtaaatactccaacggcacaacaataagcat |
38998243 |
T |
|
| Q |
120 |
tgtttcgaacttgtagtatcttgttacttttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttggg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998244 |
tgtttcgaacttgtagtatcttgttacttttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttggg |
38998343 |
T |
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| Q |
220 |
aaagtatacaagcgagacttaagggatggcaggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998344 |
aaagtatacaagcgagacttaagggatggcaggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattg |
38998443 |
T |
|
| Q |
320 |
aaatgttgtctcagttccgtcatcgtcatttggtgtctttgattggttactcactgtgatgaacaacatagtataa |
395 |
Q |
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| T |
38998444 |
aaatgttgtctcagttccgtcatcgtcatttggtgtctttgattggttactcactgtgatgaacaacatagtataa |
38998519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 41049274 - 41048929
Alignment:
| Q |
20 |
caagacaaaggcggtcgaagacatggattcctttatctgtcagcgttgcaacatcacataagatgggaagtaaatactccaacggcacaacaataagcat |
119 |
Q |
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|||||||||||| |||||||||||||||||||||||| || | | ||||||||| |||| |||||||||||||| ||||| ||||| ||||||||| |
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| T |
41049274 |
caagacaaaggcagtcgaagacatggattcctttatccgtgaatgatgcaacatcccatacaatgggaagtaaatattccaatggcacgacaataagcgc |
41049175 |
T |
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| Q |
120 |
tgtttcgaacttgtagtatcttgttacttttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttggg |
219 |
Q |
| |
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|| ||||||||| |||| | ||| |||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
41049174 |
tgcttcgaacttcgagtaccgtgtcccttttgcggaagttcaggagggtacaaataattttgatgagagttgggttat---tggggttggtggttttggg |
41049078 |
T |
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| Q |
220 |
aaagtatacaagcgagacttaagggatggcaggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattg |
319 |
Q |
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|||||||||||| |||| ||||||||||| || |||||||||||||| |||||||||||||| | | ||| |||||||| ||||||||| ||||||||| |
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| T |
41049077 |
aaagtatacaagggagagttaagggatggtagaaaagtggcagtgaagagggggaatccgcggtcccagcaagggattgctgaatttagaactgaaattg |
41048978 |
T |
|
| Q |
320 |
aaatgttgtctcagttccgtcatcgtcatttggtgtctttgattggtta |
368 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41048977 |
aaatgttgtctcagttccgtcatcgtcatttggtgtccttgattggtta |
41048929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 41041769 - 41041604
Alignment:
| Q |
20 |
caagacaaaggcggtcgaagacatggattcctttatctgtcagcgttgcaacatcacataagatgggaagtaaatactccaacggcacaacaataagcat |
119 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||| |||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
41041769 |
caagacaaaggcagtcgaaaacatggattcctttatccgtcaatggtgccgcatcacatacgatgggaagtaaatactccaacggcacaacaataagtgt |
41041670 |
T |
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| Q |
120 |
tgtttcgaacttgtagtatcttgttacttttgcggaagttcaagaaggtacaaacaattttgatga |
185 |
Q |
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|| || ||||||| |||||| |||| ||||||| ||||||||||| |||| |||||||||||||| |
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| T |
41041669 |
tgatttgaacttgcagtatcgtgttccttttgcagaagttcaagagagtactaacaattttgatga |
41041604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 41041537 - 41041463
Alignment:
| Q |
287 |
tgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcgtcatttggtgtctttga |
361 |
Q |
| |
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||||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
41041537 |
tgcaggggattgctgaatttcgagttgaaattgaaatgttgtctcagttccaccatcggcatcaggtgtctttga |
41041463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 41039458 - 41039424
Alignment:
| Q |
20 |
caagacaaaggcggtcgaagacatggattccttta |
54 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
41039458 |
caagacaaaggcagtcgaagacatggattccttta |
41039424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 344
Target Start/End: Complemental strand, 22901934 - 22901739
Alignment:
| Q |
146 |
cttttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttgggaaagtatacaagcgagacttaaggga |
245 |
Q |
| |
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||||||||| |||||| || | |||||||||||||||||||||||||||| | || |||||||||||||| || |||||||| | || ||||| || |
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| T |
22901934 |
cttttgcggtagttcaggaggcaacaaacaattttgatgagagttgggtta---tcggcgtaggtggttttggtaaggtatacaaaggtgaattaagcga |
22901838 |
T |
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| Q |
246 |
tggcaggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcg |
344 |
Q |
| |
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||| | ||||| || || |||||||| || || | || ||||| |||| || || || |||||||||||||||||||||||||||||||||| |
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| T |
22901837 |
tggaactaaagttgcttgtaagagggggaaccctcggtcgcatcagggacttgcagagttccgaactgaaattgaaatgttgtctcagttccgtcatcg |
22901739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 344
Target Start/End: Complemental strand, 22953602 - 22953407
Alignment:
| Q |
146 |
cttttgcggaagttcaagaaggtacaaacaattttgatgagagttgggttatagttggggtaggtggttttgggaaagtatacaagcgagacttaaggga |
245 |
Q |
| |
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||||||||| |||||| || | |||||||||||||||||||||||||||| | || |||||||||||||| || |||||||| | || ||||| || |
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| T |
22953602 |
cttttgcggtagttcaggaggcaacaaacaattttgatgagagttgggtta---tcggcgtaggtggttttggtaaggtatacaaaggtgaattaagcga |
22953506 |
T |
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| Q |
246 |
tggcaggaaagtggcagtgaaaagggggaatccgcgattgctgcaggggattgcggaatttagagctgaaattgaaatgttgtctcagttccgtcatcg |
344 |
Q |
| |
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||| | ||||| || || |||||||| || || | || ||||| |||| || || || |||||||||||||||||||||||||||||||||| |
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| T |
22953505 |
tggaactaaagttgcttgtaagagggggaaccctcggtcgcatcagggacttgcagagttccgaactgaaattgaaatgttgtctcagttccgtcatcg |
22953407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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