View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8592_low_1 (Length: 415)
Name: NF8592_low_1
Description: NF8592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8592_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 11018287 - 11017895
Alignment:
| Q |
19 |
tgtaactgggaatgaaataggaggaatgtgatggaaagtaatagatggaaaagattcacaaccaaaggtggttgt------gagtttttggatctcttgt |
112 |
Q |
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| T |
11018287 |
tgtaactgggaatgaaataggaggaatgtgatggaaagtaatagatggaaaagattcacaaccaaaggtggttgttgttgtgagtttttggatctcttgt |
11018188 |
T |
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| Q |
113 |
ggtggttgcaaggtggtatttggtggggtgaggataagaattgtgatggaatatgaagggttatgtgttaatatgagtttacctaactcaatcatagagt |
212 |
Q |
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| T |
11018187 |
ggtggttgcaaggtggtatttggtggggtgaggataagaattgtgatggaatatgaagggttatgtgttaatatgagtttacctaactcaatcatagagt |
11018088 |
T |
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| Q |
213 |
ttaggtgtccttttcctagggctgggtaaagaactaaagtatccttcattttgatgattatgagaaattggaaatgaagagaaggttcgagtacaa---- |
308 |
Q |
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| T |
11018087 |
tcaggtgtccttttcctagggctgggtaaagaactaaagtatccttcattttgatgattatgagaaattggaaatgaagagaaggttagagtacaaagct |
11017988 |
T |
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| Q |
309 |
--gttgctatgtttttgagaaattcttctttacttgttctatttaaggacagtgtcatgcagtattgtccaaataattgataattatgtgatg |
399 |
Q |
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| T |
11017987 |
aggttgctatgtttttgagaatttcttctttacttgttctatttaaggacagtgtcatgcagtattgtccaaataattgataattatgtgatg |
11017895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 10981540 - 10981480
Alignment:
| Q |
149 |
agaattgtgatggaatatgaagggttatgtgttaatatgagtttacctaactcaatcatag |
209 |
Q |
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| T |
10981540 |
agaattgtgatggaaaatgaagggtggtgagttgatattagttttcctaactcaaccatag |
10981480 |
T |
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