View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8592_low_2 (Length: 361)
Name: NF8592_low_2
Description: NF8592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8592_low_2 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 19456662 - 19456923
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| ||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
19456662 |
gaagatgatgactctataagagaatcaatgtttctcggcttgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagga |
19456761 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19456762 |
aatggaggcatgcatacttttgggttatatatggagtgggtaacagggtctatgtaactttgatggtaaagttaaatagctttcgcagaaattgaactcc |
19456861 |
T |
|
| Q |
203 |
tgcagtaaaggttagtgaaactactttcagtttaagtgatgaaactatagagtatttagttt |
264 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
19456862 |
tgcagtaaaggttagtgaaactgctttcagtttaattgatcaaactatagagtattttgttt |
19456923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 19465723 - 19465939
Alignment:
| Q |
8 |
tgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatgg |
107 |
Q |
| |
|
|||||| || ||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19465723 |
tgatgaatcgataaaagaatcattgtatctaaggacgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattaggaaatgg |
19465822 |
T |
|
| Q |
108 |
aggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcct-gca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19465823 |
aggcatgcatactttcggtttatatatggaataggtgacaagctctatgttactttgacggtaaagttaaatagctttcgcagaaattgagctcctacca |
19465922 |
T |
|
| Q |
207 |
gtaaaggttagtgaaac |
223 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
19465923 |
gttaaggttagtgaaac |
19465939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 19394515 - 19394736
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
19394515 |
gaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagga |
19394614 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19394615 |
aatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattgaggtcc |
19394714 |
T |
|
| Q |
203 |
tg-cagtaaaggttagtgaaac |
223 |
Q |
| |
|
|| || | |||||||||||||| |
|
|
| T |
19394715 |
tgccaattaaggttagtgaaac |
19394736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 18017393 - 18017655
Alignment:
| Q |
8 |
tgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatgg |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18017393 |
tgatgaatctataaaagaatcattgtatctaggcatgggagttggctttgcagcaggtttctgggggatttgtggttctttgtttctcattagaaaatgg |
18017492 |
T |
|
| Q |
108 |
aggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-a |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| |||| ||||||| |||| | |
|
|
| T |
18017493 |
aggcatgcatattttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaatagctttcgtagaagttgagcttctgcta |
18017592 |
T |
|
| Q |
207 |
gtaaaggttagtgaaactactttcagtttaagtgatgaaactatagagtatttagttttattc |
269 |
Q |
| |
|
||||| |||||||| |||||| |||| || |||| | |||||||||||| ||||||||| |
|
|
| T |
18017593 |
ataaagattagtgaacgtactttaagttgaattgatcatgatatagagtattttgttttattc |
18017655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 19382259 - 19382514
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||| ||||||| ||| || ||||||||||| |||||||||||||||| || |||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
19382259 |
gaagatgatgaatctataatagagtcgttgtatctaggcatgggagttggatttggagtaggtttttgggggatttgtggttctttatttcttattagga |
19382358 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
19382359 |
aatggaggcatgcatactttcggtttatctatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattgagctgc |
19382458 |
T |
|
| Q |
203 |
tg-cagtaaaggttagtgaaa-ctactttcagtttaagtgatgaaactatagagta |
256 |
Q |
| |
|
|| |||| ||||||||||||| |||||| ||||| | | || ||||||||||||| |
|
|
| T |
19382459 |
tgccagttaaggttagtgaaacctacttcaagttttattaatcaaactatagagta |
19382514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 18872500 - 18872310
Alignment:
| Q |
15 |
tctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatg |
114 |
Q |
| |
|
||||||| ||||||| ||||||| || ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18872500 |
tctataagagaatcaatgtatcttggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatg |
18872401 |
T |
|
| Q |
115 |
catactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18872400 |
catacttttggtttatatatggagtaggtgacaagctctatgttactttgatgataaagttaaatagctttcgcagatattgagctcctgc |
18872310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 19352758 - 19352960
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
19352758 |
gaaggtgatgactccataaaagaatcattgtatctaggcatgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattagaa |
19352857 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||| |||||| | |
|
|
| T |
19352858 |
aatggaggcatgcatattttcggtttatatatggagtgggtaacaggctttatgtaactttaatggtaaagttaaatagctttcgtagaatatgagcttc |
19352957 |
T |
|
| Q |
203 |
tgc |
205 |
Q |
| |
|
||| |
|
|
| T |
19352958 |
tgc |
19352960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 17951194 - 17951446
Alignment:
| Q |
8 |
tgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatgg |
107 |
Q |
| |
|
|||||| ||| |||||||||||||||| || || |||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
17951194 |
tgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttcttattcgaaaatgg |
17951293 |
T |
|
| Q |
108 |
aggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-a |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||| |||| | |
|
|
| T |
17951294 |
aggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagcttttgcagaagttgagcttctgcta |
17951393 |
T |
|
| Q |
207 |
gtaaaggttagtgaaactactttcagtttaagtgatgaaactatagagtattt |
259 |
Q |
| |
|
| ||||||||||||| ||||||| |||| || |||| | |||||||||||| |
|
|
| T |
17951394 |
gaaaaggttagtgaacctactttaagttgaattgatcacgatatagagtattt |
17951446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 17726171 - 17725989
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
17726171 |
gaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagaa |
17726072 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagcttt |
185 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
17726071 |
aatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
17725989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 19027400 - 19027218
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
19027400 |
gaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagaa |
19027301 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagcttt |
185 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
19027300 |
aatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
19027218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 19401104 - 19401324
Alignment:
| Q |
15 |
tctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatg |
114 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19401104 |
tctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattagaaaatggaggcatg |
19401203 |
T |
|
| Q |
115 |
catactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-agtaaagg |
213 |
Q |
| |
|
|||| |||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||| |
|
|
| T |
19401204 |
catattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagttgagcttttgctagtaaagg |
19401303 |
T |
|
| Q |
214 |
ttagtgaaactactttcagtt |
234 |
Q |
| |
|
|||||||| ||| ||| |||| |
|
|
| T |
19401304 |
ttagtgaacctaatttaagtt |
19401324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 18109801 - 18110028
Alignment:
| Q |
8 |
tgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatgg |
107 |
Q |
| |
|
|||||| |||||||||||||||||||| || || |||||||| |||||||||| |||||| |||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
18109801 |
tgatgaatctataaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttgttatcaggaaatgg |
18109900 |
T |
|
| Q |
108 |
aggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-a |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| ||| |||||||||||| |||||||||||||| ||||||||| || ||| ||||||| |||| | |
|
|
| T |
18109901 |
aggcatgcatactttcgttttatatatggagtgggtaacaggctctatgtaacattgatggtaaagttgaatagcttttgctgaagttgagcttctgcta |
18110000 |
T |
|
| Q |
207 |
gtaaaggttagtgaaactactttcagtt |
234 |
Q |
| |
|
||||||||||||||| ||| ||| |||| |
|
|
| T |
18110001 |
gtaaaggttagtgaacctaatttaagtt |
18110028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 17943320 - 17943517
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||| | ||||| | |
|
|
| T |
17943320 |
gaagatgatgactctataaaagaatcactgtaccttggcatgggggttggatttgcagcaggtttttgggggatttgtggttctttgttttttattagaa |
17943419 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagct |
200 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||| || ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
17943420 |
aatggaggcatgcatgctttcggtttattgatagagtgggcgacaaactctatgttactttgatcgtaaagttaaatagctttcgcagaaactgagct |
17943517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 18166522 - 18166743
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
18166522 |
gaagatgatgactctataagagaatggttgtacctaggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagaa |
18166621 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||| || |
|
|
| T |
18166622 |
aatggagacatgcatactttcggtttattgatagagttggtgacaagctctatgttactttgaacgtaaagttaaatagctttctcagaaactgagttca |
18166721 |
T |
|
| Q |
203 |
tgc-agtaaaggttagtgaaac |
223 |
Q |
| |
|
||| || |||||||||||||| |
|
|
| T |
18166722 |
tgctggttaaggttagtgaaac |
18166743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 25464425 - 25464610
Alignment:
| Q |
9 |
gatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatgga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
25464425 |
gatgactctataaaagaatcattgtatctaggcttgggagttggatttgcaataggtttctgggggatttgtggttctttgttttttattaggaaatgga |
25464524 |
T |
|
| Q |
109 |
ggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
194 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
25464525 |
ggcatgcatactttcggtttattaatggagtgagtgacaaactctatgttactttgatcgtaaagttaaaccactttcgcagaaat |
25464610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 19377000 - 19377187
Alignment:
| Q |
18 |
ataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatgcat |
117 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19377000 |
ataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgcggttctttgtttcttattaggaaatggaggcatgcat |
19377099 |
T |
|
| Q |
118 |
actttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc |
205 |
Q |
| |
|
|||||| |||||| || ||||||||||||| |||||||| |||||||| ||||||||||| || |||| ||||||| ||||||||| |
|
|
| T |
19377100 |
actttcagtttattaatagagtaggtgacaaactctatgttactttgatcgtaaagttaaacaggtttcaaagaaattaagctcctgc |
19377187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 19335378 - 19335580
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| ||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
19335378 |
gaagatgacgactctttaagagaatcattgtatctagggatgagagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattagaa |
19335477 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
||||||||||||| |||||||||||| | ||| |||| ||||||||| ||||||| |||||||| |||||||| || | ||| |||||||||||||| |
|
|
| T |
19335478 |
aatggaggcatgcttactttcggtttgtttatagagtgggtgacaagatctatgttactttgatcgtaaagttgaacatgtttaaaagaaattgagctcc |
19335577 |
T |
|
| Q |
203 |
tgc |
205 |
Q |
| |
|
||| |
|
|
| T |
19335578 |
tgc |
19335580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 14895015 - 14894807
Alignment:
| Q |
12 |
gactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggc |
111 |
Q |
| |
|
|||||||||| ||||||| ||||||| || |||||| |||||||||||| |||||| |||||||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
14895015 |
gactctataagagaatcaatgtatcttggcatgggaattggatttgcagtaggtttttgggggatttctggttctttgtttcttattagaaaatggaggc |
14894916 |
T |
|
| Q |
112 |
atgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-agtaa |
210 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| | |||| | | |||||||||||| || ||| | |
|
|
| T |
14894915 |
atgcatactttcggtttattgatggagtaggtgacaagctctatgttactttgatcccaaagttaaacaactttggaaaaaattgagctccggctagtta |
14894816 |
T |
|
| Q |
211 |
aggttagtg |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
14894815 |
aggttagtg |
14894807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 16678589 - 16678871
Alignment:
| Q |
19 |
taaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatgcata |
118 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||| | |||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
16678589 |
taaaagaatcattgtatctgggcttgggagttggttttgcggtaggtttctggggtatttgtggttctttgtttcttattaggaaatggaggcacacata |
16678688 |
T |
|
| Q |
119 |
ctttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcct-gcagtaaaggttag |
217 |
Q |
| |
|
|| || ||||| ||||||| || |||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| |||| ||| |||||||| |
|
|
| T |
16678689 |
ctatcaatttattgatggagtgggcgacaagctgtatgtaactttgatggtaaagttaaataactttcacagaagttgagttcctaatagtgaaggttag |
16678788 |
T |
|
| Q |
218 |
tgaaactactttcagtttaagtgatgaaactatagagtatttagttttattcataatttatctatgacatatttcattgatca |
300 |
Q |
| |
|
|| | ||| ||| ||||| | | || ||||||||||||| || ||| ||||| || ||||| |||||||| ||| |||||||| |
|
|
| T |
16678789 |
tggacctattttaagttttattaatcaaactatagagtaatttgttgtattcgtagtttatgtatgacatcttttattgatca |
16678871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 18117322 - 18117517
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||| ||||||| ||| |||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
18117322 |
gaagatgatgaatctataagagagtcattgtatctaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctatgtttcttattagga |
18117421 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgag |
198 |
Q |
| |
|
||||||||||||| ||||||||||| | || |||| |||||| | |||||||| |||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
18117422 |
aatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgctgaaactgag |
18117517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 19426056 - 19426231
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||| | |
|
|
| T |
19426056 |
gaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgttccttattagaa |
19426155 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
178 |
Q |
| |
|
|||||| ||||||||||||||||||| | || |||| |||| ||| ||||||| |||||||| ||||||||||| |
|
|
| T |
19426156 |
aatggaagcatgcatactttcggtttgttgatagagtgcgtgataagatctatgttactttgatcgtaaagttaaa |
19426231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 19355081 - 19355283
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||| | |
|
|
| T |
19355081 |
gaagatgacgactctatcaaagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgccgttctttgtttctaattagaa |
19355180 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||| |||||||| ||||||| |||||||| ||||||||||| | ||| |||||||||||||| |
|
|
| T |
19355181 |
aatggaggcatgcatactttcggtttgttgatagagtgcgtgacaagatctatgttactttgatcgtaaagttaaacgggtttaaaagaaattgagctcc |
19355280 |
T |
|
| Q |
203 |
tgc |
205 |
Q |
| |
|
||| |
|
|
| T |
19355281 |
tgc |
19355283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 18148184 - 18148405
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||| ||||||| ||| || |||||| |||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
18148184 |
gaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagga |
18148283 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
||||||||||||| ||||||||||| | || |||| |||||| | |||||||| ||| |||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
18148284 |
aatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactgtgatcgtaaagttaaatagctttcgccgaagctgagctcc |
18148383 |
T |
|
| Q |
203 |
tgc-agtaaaggttagtgaaac |
223 |
Q |
| |
|
||| ||| ||||||||| |||| |
|
|
| T |
18148384 |
tgctagttaaggttagttaaac |
18148405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 19462546 - 19462767
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||| ||||||| ||| || |||||| |||| |||||||| |||||||||| |||||| ||||| |||||||||||||||||||| ||| ||| |
|
|
| T |
19462546 |
gaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggcatttgtggttctttgtttcttattcgga |
19462645 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
||||||||||||| ||||||||||| | || |||| |||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
19462646 |
aatggaggcatgcgtactttcggttagttgatagagtgggtgactttctctatgttactttgaccgtaaagttaaatagctttcgcagaaactgagctcc |
19462745 |
T |
|
| Q |
203 |
tgc-agtaaaggttagtgaaac |
223 |
Q |
| |
|
||| ||| ||||||||| |||| |
|
|
| T |
19462746 |
tgctagttaaggttagttaaac |
19462767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 18104867 - 18105078
Alignment:
| Q |
8 |
tgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatgg |
107 |
Q |
| |
|
|||||| ||||||| ||| || |||||| |||| |||||||| |||||||||| ||| || | |||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
18104867 |
tgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggattcttggggattttcggttctatgtttcttattaggaaatgg |
18104966 |
T |
|
| Q |
108 |
aggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-a |
206 |
Q |
| |
|
|||||||||||||||||||| | || |||| |||||| | |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
18104967 |
aggcatgcatactttcggttagttaatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgccgaaactgagctcctgcta |
18105066 |
T |
|
| Q |
207 |
gtaaaggttagt |
218 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
18105067 |
gttaaggttagt |
18105078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 19415557 - 19415747
Alignment:
| Q |
10 |
atgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggag |
109 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||| | ||||| ||||| ||||| || |
|
|
| T |
19415557 |
atgattctatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcag |
19415656 |
T |
|
| Q |
110 |
gcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagct |
200 |
Q |
| |
|
|||||||||||| |||||||| || |||| | | ||| |||||||| |||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
19415657 |
gcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagct |
19415747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 19438312 - 19438497
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||| ||||||| ||| || ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
19438312 |
gaagatgatgaatctataagagagtcgttgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggttctatgtttcttattagga |
19438411 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgc |
188 |
Q |
| |
|
||||||||||||| ||||||||||| | || ||| ||||| | || ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
19438412 |
aatggaggcatgcgtactttcggttagttgatacagtgtgtgactatctttatgttactttgatagtaaagttaaatagctttcgc |
19438497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 24493377 - 24493200
Alignment:
| Q |
40 |
ggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatgcatactttcggtttatatatggagt |
139 |
Q |
| |
|
||||||||||||| |||| || |||||| ||| ||| |||||| |||| ||||| ||||||||||||||||| || |||| |||||||| ||||||| |
|
|
| T |
24493377 |
ggatgggagttgggtttggagtaggtttttggttgatgtgtggtcctttatttcttattaggaaatggaggcacgcgtactaccggtttatcgatggagt |
24493278 |
T |
|
| Q |
140 |
aggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-agtaaaggttagt |
218 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||| ||||||||| |||||| |||| |||||| ||| ||||||||| |
|
|
| T |
24493277 |
gggtgacaggatctatgtaactttgatggtgaagtt--atagctttcacagaaaatgagttcctgctagttaaggttagt |
24493200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 24496823 - 24496662
Alignment:
| Q |
34 |
atctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatgcatactttcggtttatata |
133 |
Q |
| |
|
||||||| |||||||||||||||| | |||||| ||| ||| |||||| ||||||||| |||||||||||| ||||| |||||| || |||||| | |
|
|
| T |
24496823 |
atctaggcatgggagttggatttggaataggtttctggttgatctgtggtcctttgtttcgtattaggaaatgg-ggcatacatactatcagtttatcga |
24496725 |
T |
|
| Q |
134 |
tggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||| |
|
|
| T |
24496724 |
tg---------acaagctctatgtaactttgatggtaaatttaaataattttcactaaaattgagctcctgc |
24496662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 8460932 - 8461230
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
8460932 |
gaagatgatgactctataagagaatcattgtatcttggcatgggagttggatttgcagtgggtttttgggggatttgtggttctttgtttcttattagga |
8461031 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||| | |||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
8461032 |
aatggaggcatgcatactatcgatttattgatggaatgggtgacaagctctatggaattttgatggtaaagttaattagatttcgcagaaattgagctcc |
8461131 |
T |
|
| Q |
203 |
tgc-agtaaaggttagtgaaactactttcagtttaagtgatgaaactatagagtatttagttttattcataatttatctatgacatatttcattgatca |
300 |
Q |
| |
|
||| || ||||||||||||| ||||||| ||||| | ||| | || ||||| ||||| ||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
8461132 |
tgctagcaaaggttagtgaacctactttaagttttattgaacacaccatagaatattttgttttatgcataatttatctatgacatgtttcattgatca |
8461230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 2709195 - 2708889
Alignment:
| Q |
15 |
tctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattaggaaatggaggcatg |
114 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
2709195 |
tctataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggtcctttgtttcttattaggaaatggaggaaca |
2709096 |
T |
|
| Q |
115 |
catactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcctgc-agtaaagg |
213 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||| ||||| || | ||| |||| |
|
|
| T |
2709095 |
catactatcggtttattgatggagtaggtgacaagctctatgtaactttgatgataaagttaaacaactttcatagaaatcgagcttctacaagttaagg |
2708996 |
T |
|
| Q |
214 |
ttagtgaaactactt-tcagtttaagtgatgaaactatagagtatttagttttattcataatttatctatgacatatttcattgatcagagactatagag |
312 |
Q |
| |
|
|||||||| |||||| |||||| | |||| |||||||| | ||||| |||||||||| ||| ||| |||||||| ||| ||||||| | |||| |||| |
|
|
| T |
2708995 |
ttagtgaacctacttcacagttt-attgatcaaactatacaatattttgttttattcacaatatatgtatgacatgttttattgatc--aaactagagag |
2708899 |
T |
|
| Q |
313 |
tattttgttt |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
2708898 |
tattttgttt |
2708889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 15536899 - 15537101
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
15536899 |
gaagatgatgactctaacaaagaatcattgtatctagggatgggagttggatttgcggtaggtttctgggggatttgtggttctttgtttcttattagaa |
15536998 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagctcc |
202 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| ||||||| |||||||| ||||||||||| | |||| ||||||||||||||| |
|
|
| T |
15536999 |
aatggaggcatgcatactttcggtttactgataaagtaggtgacaagatctatgttactttgatcgtaaagttaaacatgtttcacagaaattgagctcc |
15537098 |
T |
|
| Q |
203 |
tgc |
205 |
Q |
| |
|
||| |
|
|
| T |
15537099 |
tgc |
15537101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 13665582 - 13665385
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| | || || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
13665582 |
gaagatgacgactctataaaagaatcattgaaccttggcatgggggttggatttgcagcaggtttctgggggatatgtggttctttgtttcttattagaa |
13665483 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaatagctttcgcagaaattgagct |
200 |
Q |
| |
|
||||||||||||||| |||||||||| | || |||| || ||||| |||||| | |||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
13665482 |
aatggaggcatgcatgctttcggttttttgatagagtgggcgacaatctctatattactttgatggtaaagttaaatagctttcgcaggaactgagct |
13665385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 21952 - 22127
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| || ||||| ||||||||||||| ||||| |||||||||| |||||||||||||||||||| | |
|
|
| T |
21952 |
gaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggatttttggttctttgtttctcattacaa |
22051 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
22052 |
aatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
22127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 2204 - 2029
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||| | |
|
|
| T |
2204 |
gaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaa |
2105 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
2104 |
aatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 2734 - 2558
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatggggg-atttgtggttctttgtttctcattagg |
101 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| || ||||| ||||||||||||| ||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
2734 |
gaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggtatttttggttctttgtttctcattaca |
2635 |
T |
|
| Q |
102 |
aaatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
178 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
2634 |
aaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 6769 - 6944
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||| | |
|
|
| T |
6769 |
gaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaa |
6868 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
6869 |
aatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
6944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 11867 - 12042
Alignment:
| Q |
3 |
gaaggtgatgactctataaaagaatcattgtatctagggatgggagttggatttgcagcaggtttatgggggatttgtggttctttgtttctcattagga |
102 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||| | |
|
|
| T |
11867 |
gaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaa |
11966 |
T |
|
| Q |
103 |
aatggaggcatgcatactttcggtttatatatggagtaggtgacaagctctatgtaactttgatggtaaagttaaa |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||| ||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
11967 |
aatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
12042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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