View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8593_high_1 (Length: 668)
Name: NF8593_high_1
Description: NF8593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8593_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 5 - 663
Target Start/End: Complemental strand, 41854574 - 41853916
Alignment:
| Q |
5 |
ggagaatgaatgtaactgggagcataacacgctcatcaatgagctaattcaagggatggatgtagcaaagagactgaaagaagacttgaggacaccatat |
104 |
Q |
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| T |
41854574 |
ggagaatgaatgtaactgggagcataacacactcatcaatgagctaattcaagggatggatgtagcaaagagactgaaagaagacttgaggacaccatat |
41854475 |
T |
|
| Q |
105 |
tcccttggcacaagagattcacagatgcagatgatattatcttcctatgaaaaggctttacaaattttaagatgtaatgaatcaacttctaagtcacagc |
204 |
Q |
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| T |
41854474 |
tcccttggcacaagagattcacagatgcagatgatattatcttcctatgaaaaggctttacaaattttaagatgtaatgaatcaacttctaagtcacagc |
41854375 |
T |
|
| Q |
205 |
cagtgactccagtaataacttcgttaccggaatccccagtgtctaccaatgggagtcctctgagcgaggactttgatgggaccttccaagatcaccaaga |
304 |
Q |
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| T |
41854374 |
cagtgactccagtaataacttcgttaccggaatccccagtgtctaccaatgggagtcctctgagcgaggactttgatgggaccttccaagatcaccaaga |
41854275 |
T |
|
| Q |
305 |
agttaaaaataaatcaaagaaaaggtaaatttattagacacacttggtaacagttttataccacagaaatcagctaaattttggttatactaaaactcct |
404 |
Q |
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| T |
41854274 |
agttaaaaataaatcaaagaaaaggtaaatttattagacacacttggtaacagttttataccacagaaatcagctaaattttggttatactaaaactcct |
41854175 |
T |
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| Q |
405 |
ttgtcctaacaa-nnnnnnnnncctgaaattgctttcagaaaggttgcgcccaaatggatggatcagataagagtgagctgtgacagtagccttgaagga |
503 |
Q |
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| T |
41854174 |
ttgtcctaacaacttttttcttcctgaaattgctttcagaaaggttgcgcccaaatggatggatcagataagagtgagctgtgacagtagccttgaagga |
41854075 |
T |
|
| Q |
504 |
ccaaatgaagatggctacaactggagaaaatatggtcagaaagatatccttggcaccaaacatccaaggtgagaggaattctaatatcatgcttaagaaa |
603 |
Q |
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| T |
41854074 |
ccaaatgaagatggctacaactggagaaaatatggtcagaaagatatccttggcaccaaacatccaaggtgagaggaattctaatatcatgcttaagaaa |
41853975 |
T |
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| Q |
604 |
aaaccataagaattcttgaattatgtataaattgcatttacctgtgatgtccatctcatt |
663 |
Q |
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| T |
41853974 |
aaaccataagaattcttgaattatgtataaattgcatttacctgtgatgt-catctcatt |
41853916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 573
Target Start/End: Complemental strand, 41261617 - 41261569
Alignment:
| Q |
525 |
tggagaaaatatggtcagaaagatatccttggcaccaaacatccaaggt |
573 |
Q |
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| T |
41261617 |
tggagaaaatatggtcagaaagacatccttggagccatgcatccaaggt |
41261569 |
T |
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