View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8593_high_11 (Length: 244)
Name: NF8593_high_11
Description: NF8593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8593_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 2484438 - 2484249
Alignment:
| Q |
14 |
cagagagggacaatcaatcagaaaaactaatgaaggagaaactagttaaacaaagaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagt |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484438 |
cagagagggacaatcaatgagaaaaactaatgagggagaaaccaattaaacaaacaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagt |
2484339 |
T |
|
| Q |
114 |
gcaatcataaaggggagatatgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaacc |
203 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484338 |
gcaatcataaaggggagatgtgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaacc |
2484249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University