View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8593_high_2 (Length: 503)
Name: NF8593_high_2
Description: NF8593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8593_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 4 - 490
Target Start/End: Complemental strand, 2060222 - 2059738
Alignment:
| Q |
4 |
gagtttggtgttcaacaatatgaatgaacgtgacatgaagcaagcaccccagaaatcaaatttcttaatccnnnnnnngggtatgttctaaaattacctt |
103 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |
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| T |
2060222 |
gagtttgatgttcaacaatatgaatgaacgtgacatgaagcaagcaccc-agaaatcaaatttcttaatcctttttttggttatgttctaaaattacct- |
2060125 |
T |
|
| Q |
104 |
aaagtaattatgacttaaagtcaaattattaggaagaacttatgtatnnnnnnngctcaattt-agggtcaaaaacatcaaaacaccttcaatcatggtg |
202 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||| |
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| T |
2060124 |
aaagtaattatgacttcaagtcaaattattaggaagaacttatgtataaaaaaagctcatttttagggtcaaaaacatcaaaacacct-caatcatggtg |
2060026 |
T |
|
| Q |
203 |
gtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctatttcttgcaactaatatcatctcgaaagttttgcgaataaagtttca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2060025 |
gtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctatttctcgcaactaatatcatctcgaaagtttcgcgaataaagtttca |
2059926 |
T |
|
| Q |
303 |
accaattaagttgtgcctttcacggaaaacagagcaagtattgcttgtatgtggttacatgttttatacacttaagccatcgtgagagctttgtgaatca |
402 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
2059925 |
accaattaagttgtgcctttcacggaaaacaaagcaagtattgcttgtatgtggttacatgttttatacacttaagccattgtgagagtgttgtgaatca |
2059826 |
T |
|
| Q |
403 |
aaattcgctacatcaaacattatccaaagtagaatagcagaaaatagatattcacaaacatgcacataagaatataacaatccaaact |
490 |
Q |
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| T |
2059825 |
aaattcgctacatcaaacattatccaaagtagaatagcagaaaatagatattcacaaacatgcacataagaatataacaatccaaact |
2059738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 164 - 488
Target Start/End: Complemental strand, 2063826 - 2063509
Alignment:
| Q |
164 |
tttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctatttcttgc |
263 |
Q |
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|||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2063826 |
tttagggtaaaaaacatcaaaacaccttaagtcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctatttctcgc |
2063727 |
T |
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| Q |
264 |
aactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaacagagcaagtattgcttgtatgtggttacatg |
363 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||| |||| ||| |||||||| |||||| ||||||||||||||||||||||||| | | |
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| T |
2063726 |
aactaatatcatctcgaaagtttcacgaataaagtttcaacaaatgaagtagtgtctttcacgaaaaacatagcaagtattgcttgtatgtggttaaacg |
2063627 |
T |
|
| Q |
364 |
ttttatacacttaagccatcgtgagagctttgtgaatcaaaattcgctacatcaaacattatccaaagtagaatagcagaaaatagatattcacaaacat |
463 |
Q |
| |
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|||||| ||| |||||||||| ||||| ||||| | | |||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
2063626 |
ttttat-------agcaatcgtgagagtgccgtgaaccaaaacttgttacatcaagcattttccaaagtagagtagcagaaaatagatattcacaaacat |
2063534 |
T |
|
| Q |
464 |
gcacataagaatataacaatccaaa |
488 |
Q |
| |
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|||||||| | |||||||||||||| |
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| T |
2063533 |
gcacataaaattataacaatccaaa |
2063509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 490
Target Start/End: Complemental strand, 2055654 - 2055592
Alignment:
| Q |
428 |
aaagtagaatagcagaaaatagatattcacaaacatgcacataagaatataacaatccaaact |
490 |
Q |
| |
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|||||||| |||||||||||| | ||||||||||| |||||||| |||||||||||||||||| |
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| T |
2055654 |
aaagtagattagcagaaaataaagattcacaaacaagcacataaaaatataacaatccaaact |
2055592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 249
Target Start/End: Complemental strand, 2055773 - 2055641
Alignment:
| Q |
121 |
aagtcaaattattaggaagaac-ttatgtatnnnnnnngctcaattt-agggtcaaaaacatcaaaacaccttc---aatcatggtggtcatcaatcaaa |
215 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||| ||| |||||||||| ||||||| ||||||| | |||||||| |||| ||||| |
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| T |
2055773 |
aagtcaaattattaggaagaacgttatgtataaaagaagctcatttttagggtcaaaatcatcaaa-caccttcttcagtcatggtgatcattgatcaag |
2055675 |
T |
|
| Q |
216 |
tagcaaatagttttgaaatgaaagtagattagca |
249 |
Q |
| |
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||||||| |||||| |||| |||||||||||||| |
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| T |
2055674 |
tagcaaagagttttaaaataaaagtagattagca |
2055641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 2055891 - 2055859
Alignment:
| Q |
18 |
acaatatgaatgaacgtgacatgaagcaagcac |
50 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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| T |
2055891 |
acaatatgaatgaacatgacatgaagcaagcac |
2055859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 20163111 - 20163193
Alignment:
| Q |
291 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
372 |
Q |
| |
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||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
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| T |
20163111 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
20163193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 20194385 - 20194303
Alignment:
| Q |
291 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
372 |
Q |
| |
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||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
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| T |
20194385 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
20194303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 44278897 - 44278815
Alignment:
| Q |
291 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
372 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
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| T |
44278897 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
44278815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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