View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8593_high_8 (Length: 292)

Name: NF8593_high_8
Description: NF8593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8593_high_8
NF8593_high_8
[»] chr5 (2 HSPs)
chr5 (19-278)||(38945225-38945485)
chr5 (63-176)||(34904342-34904455)
[»] chr6 (1 HSPs)
chr6 (26-273)||(941366-941614)
[»] chr7 (3 HSPs)
chr7 (28-262)||(23819209-23819444)
chr7 (19-141)||(24809951-24810073)
chr7 (61-173)||(21117163-21117275)
[»] chr4 (2 HSPs)
chr4 (26-278)||(43990453-43990705)
chr4 (54-160)||(19317111-19317217)
[»] chr1 (3 HSPs)
chr1 (26-278)||(20638301-20638554)
chr1 (26-122)||(11352793-11352889)
chr1 (100-172)||(15231307-15231379)
[»] chr8 (1 HSPs)
chr8 (26-278)||(18479895-18480148)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 38945485 - 38945225
Alignment:
Q  19 caagggccgcataaagaggactttgagttgagagggaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctcca 118  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38945485 caagggccgcataaagaggactttaagttgagagggaataatcgtctttaagccatggagcaccgaacaaaggaatactagcaccagaaccaattctcca 38945386  T
Q  119 tctagcaccttgtttaatcaccattttagcactgaaaatactccgccaaacataattggga-tagctccaagcctagaactcaaaatatcacacggagga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  38945385 tctagcaccttgtttaatcaccattttagcactgaaaatactccgccaaacataattgggattagctccaagcctagaactcaaaaaatcacacggagga 38945286  T
Q  218 aaatatcgtgccttaaataaacgagacaaaagattagtattatcaacttgaaatttccatc 278  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38945285 aaatattgtgccttaaataaacgagacaaaagactagtattatcaacttgaaatttccatc 38945225  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 34904455 - 34904342
Alignment:
Q  63 tctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatctagcaccttgtttaatcaccattttagcactgaaaatactcc 162  Q
    |||||||||||||| ||| | |||| ||||||| || |||| || |||||||||||||||||||| ||||||| || ||||||||||||||||||||| |    
T  34904455 tctttaagccatggtgcatctaacaaaggaatagtatcacctgatccaattctccatctagcaccctgtttaaccatcattttagcactgaaaatacttc 34904356  T
Q  163 gccaaacataattg 176  Q
    |||| |||||||||    
T  34904355 gccatacataattg 34904342  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 273
Target Start/End: Complemental strand, 941614 - 941366
Alignment:
Q  26 cgcataaagaggactttgagttgagagggaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatctagca 125  Q
    |||||||||||| ||||| ||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| ||    
T  941614 cgcataaagagggctttgtgttgagagggaacaaccgtctttaagccacggagcaccgaacaaaggaatactagcaccagaaccaatcctccatctaaca 941515  T
Q  126 ccttgtttaatcaccattttagcactgaaaatactccgccaaacataattggga-tagctccaagcctagaactcaaaatatcacacggaggaaaatatc 224  Q
    || ||||||| ||  ||||||||  |||| ||||| ||||| |||||  ||||| ||| |||| ||||||||||||||| ||||||| | ||||||||||    
T  941514 ccctgtttaaccataattttagcgttgaatatacttcgccatacatagctgggattaggtccatgcctagaactcaaaaaatcacactgtggaaaatatc 941415  T
Q  225 gtgccttaaataaacgagacaaaagattagtattatcaacttgaaattt 273  Q
    |||| || |||||| |||||| |||| |||| ||||||| |||||||||    
T  941414 gtgctttgaataaaggagacacaagactagtgttatcaatttgaaattt 941366  T

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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 262
Target Start/End: Complemental strand, 23819444 - 23819209
Alignment:
Q  28 cataaagaggactttgagttgagagggaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatctagcacc 127  Q
    |||||||| | ||||| ||||||||||||||  ||||||||||||||| |||||| |||| ||||| ||||||||| |||||||| ||||||||||||||    
T  23819444 cataaagaaggctttgtgttgagagggaacatccatctttaagccatgaagcaccaaacaaaggaacactagcaccggaaccaatcctccatctagcacc 23819345  T
Q  128 ttgtttaatcaccattttagcactgaaaatactccgccaaacataattggga-tagctccaagcctagaactcaaaatatcacacggaggaaaatatcgt 226  Q
     | ||||| ||| |||||||||||||| ||||| ||||| |||||  ||||| |||||||||||||||||||||||| |||||||  ||| ||||||| |    
T  23819344 ctatttaaccacaattttagcactgaatatacttcgccatacatagctgggattagctccaagcctagaactcaaaaaatcacactaagggaaatatcat 23819245  T
Q  227 gccttaaataaacgagacaaaagattagtattatca 262  Q
    ||||| ||||||||||||| |||| |||| ||||||    
T  23819244 gccttgaataaacgagacacaagactagtgttatca 23819209  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 24809951 - 24810073
Alignment:
Q  19 caagggccgcataaagaggactttgagttgagagggaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctcca 118  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||    
T  24809951 caagggcagcataaagaggactttgagttgagagggaacaaccatctttaagccatggagcaccgaacaaaggaatactagcaccaaaaccaattcttca 24810050  T
Q  119 tctagcaccttgtttaatcacca 141  Q
    |||||||| |||||||| |||||    
T  24810051 tctagcactttgtttaaccacca 24810073  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 21117275 - 21117163
Alignment:
Q  61 catctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatctagcaccttgtttaatcaccattttagcactgaaaatact 160  Q
    ||||||| ||||| || ||||| |||| ||||||| ||||||  |  ||||||||||||||||| || |||| ||  ||||||||||| || ||||||||    
T  21117275 catctttgagccacggggcaccaaacaaaggaatattagcactcgttccaattctccatctagcgccctgttgaacaaccattttagcgctaaaaatact 21117176  T
Q  161 ccgccaaacataa 173  Q
     ||||| ||||||    
T  21117175 gcgccacacataa 21117163  T

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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 43990453 - 43990705
Alignment:
Q  26 cgcataaagaggactttgagttgagagggaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatctagca 125  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||| | |||||| |||| |||||||||||||||| ||||||| ||||||||| ||    
T  43990453 cgcataaagagggctttgtgttgagagggaacaaccatctttaagccacgaagcaccaaacaaaggaatactagcaccataaccaatcctccatctaaca 43990552  T
Q  126 ccttgtttaatcaccattttagcactgaaaatactccgccaaacataattggga-tagctccaagcctagaactcaaaatatcacacggaggaaaatatc 224  Q
    || |||| || ||| |||||||| || || ||||| ||||| |||||  ||||| |||  |||||||||||||||||||  |||||  | ||||||||||    
T  43990553 cc-tgttcaaccacaattttagcgctaaatatacttcgccatacatagctgggattagggccaagcctagaactcaaaaagtcacattgtggaaaatatc 43990651  T
Q  225 gtgccttaaataaacgagacaaaagattagtattatcaacttgaaatttccatc 278  Q
    |||| || ||||||||||||| |||| |||| ||||||| ||||||||||||||    
T  43990652 gtgctttgaataaacgagacacaagactagtgttatcaatttgaaatttccatc 43990705  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 19317111 - 19317217
Alignment:
Q  54 gaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatctagcaccttgtttaatcaccattttagcactga 153  Q
    ||||| || |||||||||||||| | ||  |||| ||||||| ||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||    
T  19317111 gaacactcgtctttaagccatggtgtacttaacaaaggaatagtagcacctgatccaatcctccatctagcaccttgtttaaccaccattttagcactga 19317210  T
Q  154 aaatact 160  Q
    |||||||    
T  19317211 aaatact 19317217  T

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Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 20638554 - 20638301
Alignment:
Q  26 cgcataaagaggactttgagttgagagggaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatctagca 125  Q
    |||||||||||| |||||  |||| ||||||||| | || ||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||| ||    
T  20638554 cgcataaagagggctttgtattgaaagggaacaaccctcattaagccatagagcaccgaacaaaggaatactagcaccagaaccaatcctccaactaaca 20638455  T
Q  126 ccttgtttaatcaccattttagcactgaaaatactccgccaaacataattggga-tagctccaagcctagaactcaaaatatcacacggaggaaaatatc 224  Q
    || ||||||| ||| |||||||| ||||| |||||  |||| ||||| |||||| ||| |||||||||||||||| ||| | ||||  | || ||||| |    
T  20638454 ccctgtttaaccacaattttagcgctgaatatactttgccatacatagttgggattaggtccaagcctagaactcgaaaaaacacattgtggtaaataac 20638355  T
Q  225 gtgccttaaataaacgagacaaaagattagtattatcaacttgaaatttccatc 278  Q
    |||| || |||||| |||||| |||| |||| ||||||| ||||||||||||||    
T  20638354 gtgctttgaataaatgagacacaagactagtgttatcaatttgaaatttccatc 20638301  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 11352793 - 11352889
Alignment:
Q  26 cgcataaagaggactttgagttgagagggaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatcta 122  Q
    |||||||||||| ||||| ||||||||||||||| | ||||||||||| |||||||| || | |||||||||||||| ||||||||| |||||||||    
T  11352793 cgcataaagagggctttgtgttgagagggaacaaccgtctttaagccacggagcaccaaaaaaaggaatactagcactagaaccaatcctccatcta 11352889  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 15231379 - 15231307
Alignment:
Q  100 caccagaaccaattctccatctagcaccttgtttaatcaccattttagcactgaaaatactccgccaaacata 172  Q
    ||||| |||| ||||||||||  | ||||||||| | ||| ||||||||||| |||||||| | |||||||||    
T  15231379 caccaaaacctattctccatcgcgtaccttgtttcaccacaattttagcactaaaaatacttctccaaacata 15231307  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 18480148 - 18479895
Alignment:
Q  26 cgcataaagaggactttgagttgagagggaacaatcatctttaagccatggagcaccgaacacaggaatactagcaccagaaccaattctccatctagca 125  Q
    ||||||||| || | ||| ||| ||||||||||  | ||||||||||| | ||||||  ||| |||||||||||||| ||||||||| ||||||||| ||    
T  18480148 cgcataaagcgggcattgtgttaagagggaacatccgtctttaagccacgaagcaccacacaaaggaatactagcactagaaccaatcctccatctaaca 18480049  T
Q  126 ccttgtttaatcaccattttagcactgaaaatactccgccaaacataattggga-tagctccaagcctagaactcaaaatatcacacggaggaaaatatc 224  Q
    || ||||||| ||| |||||||| || || ||||| ||||| |||||  || || |||  |||||||||||||||||||  |||||  | ||||||||||    
T  18480048 ccctgtttaaacacaattttagcgctaaatatacttcgccatacatagctgcgattagggccaagcctagaactcaaaaagtcacattgtggaaaatatc 18479949  T
Q  225 gtgccttaaataaacgagacaaaagattagtattatcaacttgaaatttccatc 278  Q
    |||| || ||||||||||||| |||| |||| ||||||| || |||||| ||||    
T  18479948 gtgctttgaataaacgagacacaagactagtgttatcaatttaaaattttcatc 18479895  T

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