View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8593_low_4 (Length: 417)

Name: NF8593_low_4
Description: NF8593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8593_low_4
NF8593_low_4
[»] chr6 (32 HSPs)
chr6 (18-417)||(30780942-30781343)
chr6 (296-417)||(34446575-34446690)
chr6 (365-417)||(6389753-6389805)
chr6 (297-345)||(31959220-31959268)
chr6 (296-347)||(7625184-7625235)
chr6 (299-345)||(8389411-8389457)
chr6 (296-346)||(8776908-8776958)
chr6 (296-346)||(28152167-28152217)
chr6 (296-346)||(34595203-34595253)
chr6 (295-417)||(34894967-34895083)
chr6 (296-345)||(9107299-9107348)
chr6 (364-417)||(17168459-17168512)
chr6 (370-417)||(12235521-12235568)
chr6 (368-417)||(12086345-12086394)
chr6 (364-417)||(19602177-19602230)
chr6 (296-368)||(32313463-32313535)
chr6 (296-343)||(3209471-3209518)
chr6 (374-417)||(9024182-9024225)
chr6 (299-346)||(9025448-9025495)
chr6 (295-346)||(9027236-9027287)
chr6 (295-346)||(16766777-16766828)
chr6 (295-345)||(7938170-7938220)
chr6 (296-346)||(8365448-8365498)
chr6 (375-417)||(9195761-9195803)
chr6 (296-346)||(17327590-17327640)
chr6 (296-345)||(7248439-7248488)
chr6 (376-417)||(7569176-7569217)
chr6 (296-416)||(10339054-10339174)
chr6 (364-417)||(26247436-26247489)
chr6 (297-346)||(31384999-31385048)
chr6 (297-345)||(17841530-17841578)
chr6 (365-417)||(34541747-34541799)
[»] chr3 (45 HSPs)
chr3 (296-417)||(52369785-52369906)
chr3 (295-417)||(25074799-25074915)
chr3 (296-417)||(21211298-21211413)
chr3 (296-346)||(40052381-40052431)
chr3 (295-413)||(8903446-8903555)
chr3 (294-359)||(2408588-2408653)
chr3 (364-417)||(12704653-12704706)
chr3 (296-345)||(34185052-34185101)
chr3 (298-346)||(25775576-25775624)
chr3 (370-417)||(3730167-3730214)
chr3 (295-417)||(8039216-8039338)
chr3 (295-346)||(27505320-27505371)
chr3 (295-346)||(55401144-55401195)
chr3 (375-417)||(1830353-1830395)
chr3 (375-417)||(20691329-20691371)
chr3 (298-417)||(24204983-24205090)
chr3 (296-342)||(49651716-49651762)
chr3 (299-356)||(12100328-12100385)
chr3 (368-417)||(15864843-15864892)
chr3 (364-417)||(25892470-25892523)
chr3 (296-411)||(4704220-4704335)
chr3 (298-346)||(4987222-4987270)
chr3 (296-344)||(20503536-20503584)
chr3 (296-344)||(40993275-40993323)
chr3 (295-346)||(17276796-17276847)
chr3 (364-415)||(21367289-21367340)
chr3 (296-417)||(8039764-8039884)
chr3 (296-346)||(11610578-11610628)
chr3 (375-413)||(13799518-13799556)
chr3 (295-345)||(16789584-16789634)
chr3 (296-346)||(18427018-18427068)
chr3 (383-417)||(21149077-21149111)
chr3 (296-346)||(25064987-25065037)
chr3 (375-417)||(34189437-34189479)
chr3 (296-346)||(35223007-35223057)
chr3 (296-346)||(41961579-41961629)
chr3 (296-337)||(3730108-3730149)
chr3 (297-346)||(14216972-14217021)
chr3 (297-346)||(14223101-14223150)
chr3 (364-417)||(14223849-14223902)
chr3 (297-346)||(15999951-16000000)
chr3 (368-417)||(25365472-25365521)
chr3 (364-417)||(34307776-34307829)
chr3 (297-417)||(1389836-1389956)
chr3 (296-332)||(21861658-21861694)
[»] chr4 (43 HSPs)
chr4 (296-417)||(31243476-31243597)
chr4 (300-417)||(20743210-20743327)
chr4 (309-417)||(32910561-32910669)
chr4 (296-416)||(17876166-17876285)
chr4 (296-417)||(24343517-24343632)
chr4 (296-356)||(53381530-53381590)
chr4 (295-417)||(7012076-7012198)
chr4 (296-417)||(3144587-3144701)
chr4 (296-346)||(19482748-19482798)
chr4 (296-417)||(19230241-19230358)
chr4 (296-417)||(39507059-39507168)
chr4 (296-346)||(23292926-23292976)
chr4 (297-346)||(3947702-3947751)
chr4 (296-369)||(10133755-10133828)
chr4 (296-417)||(18513175-18513290)
chr4 (296-344)||(29205539-29205587)
chr4 (311-417)||(944617-944717)
chr4 (295-342)||(12895213-12895260)
chr4 (364-407)||(23386166-23386209)
chr4 (296-339)||(40784029-40784072)
chr4 (335-417)||(6273954-6274036)
chr4 (296-350)||(16184896-16184950)
chr4 (296-346)||(22234819-22234869)
chr4 (297-414)||(30982808-30982924)
chr4 (296-344)||(715545-715593)
chr4 (296-344)||(752871-752919)
chr4 (299-346)||(28084593-28084640)
chr4 (378-417)||(49659533-49659572)
chr4 (375-417)||(5775365-5775407)
chr4 (296-417)||(11931290-11931410)
chr4 (296-346)||(34306744-34306794)
chr4 (371-409)||(34515877-34515915)
chr4 (296-346)||(35161105-35161155)
chr4 (376-417)||(5654599-5654640)
chr4 (376-417)||(46180944-46180985)
chr4 (299-356)||(46715416-46715473)
chr4 (376-417)||(47191001-47191042)
chr4 (295-347)||(941313-941365)
chr4 (381-417)||(10546158-10546194)
chr4 (296-344)||(11596297-11596345)
chr4 (298-346)||(22440559-22440607)
chr4 (296-344)||(35157925-35157973)
chr4 (296-344)||(40699887-40699935)
[»] chr2 (30 HSPs)
chr2 (296-417)||(11307934-11308053)
chr2 (296-417)||(10535685-10535808)
chr2 (352-417)||(25544491-25544556)
chr2 (297-417)||(23354582-23354701)
chr2 (298-417)||(23354926-23355044)
chr2 (309-417)||(24011046-24011148)
chr2 (296-350)||(37419819-37419873)
chr2 (296-417)||(30563419-30563540)
chr2 (296-417)||(38919216-38919336)
chr2 (296-344)||(18622673-18622721)
chr2 (296-344)||(18840953-18841001)
chr2 (296-346)||(37559046-37559096)
chr2 (298-344)||(2438661-2438707)
chr2 (296-346)||(26769591-26769641)
chr2 (375-417)||(34006998-34007040)
chr2 (296-346)||(38117099-38117149)
chr2 (376-417)||(12748694-12748735)
chr2 (297-345)||(44860401-44860449)
chr2 (374-417)||(18570982-18571025)
chr2 (295-346)||(42511321-42511372)
chr2 (375-413)||(8300226-8300264)
chr2 (296-346)||(15972942-15972992)
chr2 (296-346)||(41843515-41843565)
chr2 (296-345)||(15909570-15909619)
chr2 (295-344)||(19980746-19980795)
chr2 (297-346)||(28596538-28596587)
chr2 (296-345)||(34993922-34993971)
chr2 (296-344)||(11223793-11223841)
chr2 (366-410)||(30394474-30394518)
chr2 (381-417)||(36281695-36281731)
[»] chr8 (40 HSPs)
chr8 (298-417)||(44067526-44067644)
chr8 (297-417)||(13009423-13009542)
chr8 (296-347)||(29510233-29510284)
chr8 (296-417)||(40063961-40064081)
chr8 (339-417)||(13845244-13845322)
chr8 (368-417)||(35431140-35431189)
chr8 (295-417)||(39820439-39820548)
chr8 (296-356)||(38487157-38487217)
chr8 (370-417)||(28883880-28883927)
chr8 (295-345)||(22652057-22652107)
chr8 (368-417)||(1676722-1676771)
chr8 (296-345)||(30067968-30068017)
chr8 (298-346)||(926730-926778)
chr8 (295-347)||(36450693-36450745)
chr8 (190-221)||(2723776-2723807)
chr8 (374-417)||(3025561-3025604)
chr8 (295-342)||(15816057-15816104)
chr8 (370-417)||(22850354-22850401)
chr8 (297-347)||(2035816-2035866)
chr8 (296-346)||(8343396-8343446)
chr8 (296-342)||(11944749-11944795)
chr8 (296-338)||(16641909-16641951)
chr8 (339-417)||(18130504-18130581)
chr8 (361-415)||(26609758-26609812)
chr8 (296-345)||(8343037-8343086)
chr8 (296-365)||(9402046-9402115)
chr8 (300-369)||(14659639-14659708)
chr8 (296-341)||(17751730-17751775)
chr8 (296-341)||(17760717-17760762)
chr8 (309-346)||(22943302-22943339)
chr8 (295-368)||(24413498-24413570)
chr8 (364-413)||(26915236-26915285)
chr8 (296-344)||(3454578-3454626)
chr8 (365-417)||(8017496-8017548)
chr8 (381-417)||(12559119-12559155)
chr8 (296-344)||(13403177-13403225)
chr8 (298-338)||(16987990-16988030)
chr8 (381-417)||(29198492-29198528)
chr8 (377-417)||(30068037-30068077)
chr8 (295-339)||(34127171-34127215)
[»] chr7 (35 HSPs)
chr7 (301-417)||(43250003-43250118)
chr7 (296-417)||(7133212-7133327)
chr7 (296-345)||(6490786-6490835)
chr7 (295-416)||(23930230-23930351)
chr7 (364-417)||(29812660-29812713)
chr7 (297-345)||(32287404-32287452)
chr7 (311-417)||(5938482-5938582)
chr7 (295-346)||(14729772-14729823)
chr7 (296-346)||(5409771-5409821)
chr7 (294-346)||(598277-598329)
chr7 (294-346)||(43027402-43027454)
chr7 (296-346)||(32093954-32094005)
chr7 (296-346)||(9778574-9778624)
chr7 (296-346)||(17852069-17852119)
chr7 (295-345)||(24105748-24105798)
chr7 (296-417)||(38804489-38804604)
chr7 (375-416)||(18233605-18233646)
chr7 (368-417)||(23751910-23751959)
chr7 (297-417)||(32308130-32308249)
chr7 (298-346)||(22868116-22868164)
chr7 (299-342)||(2533761-2533804)
chr7 (296-351)||(21138931-21138986)
chr7 (295-346)||(29763128-29763179)
chr7 (295-345)||(1433529-1433579)
chr7 (296-342)||(24339726-24339772)
chr7 (374-416)||(37775993-37776035)
chr7 (375-417)||(38134413-38134455)
chr7 (364-417)||(4017790-4017843)
chr7 (368-417)||(12278845-12278894)
chr7 (364-417)||(17780080-17780133)
chr7 (295-348)||(30813864-30813917)
chr7 (385-417)||(16341506-16341538)
chr7 (296-344)||(21880223-21880271)
chr7 (298-346)||(26033392-26033440)
chr7 (300-344)||(40287306-40287350)
[»] chr5 (35 HSPs)
chr5 (294-417)||(2419867-2419988)
chr5 (364-417)||(39695995-39696048)
chr5 (364-417)||(43554531-43554584)
chr5 (296-413)||(26205694-26205805)
chr5 (296-345)||(17393305-17393354)
chr5 (296-344)||(38464313-38464361)
chr5 (295-346)||(2436980-2437031)
chr5 (295-346)||(17593662-17593713)
chr5 (370-417)||(31264448-31264495)
chr5 (363-417)||(5467973-5468027)
chr5 (296-346)||(14873591-14873641)
chr5 (293-346)||(21576682-21576735)
chr5 (381-417)||(2577193-2577229)
chr5 (365-417)||(18607094-18607146)
chr5 (296-344)||(19820328-19820376)
chr5 (298-346)||(21190998-21191046)
chr5 (377-417)||(21577117-21577157)
chr5 (370-417)||(18288053-18288100)
chr5 (296-343)||(37328775-37328822)
chr5 (378-417)||(42469231-42469270)
chr5 (298-356)||(7997108-7997166)
chr5 (304-346)||(17088360-17088402)
chr5 (367-417)||(21137699-21137749)
chr5 (375-417)||(28588681-28588723)
chr5 (296-346)||(30098406-30098456)
chr5 (296-346)||(35017112-35017162)
chr5 (299-345)||(39268541-39268587)
chr5 (296-342)||(39698625-39698671)
chr5 (295-344)||(7677787-7677836)
chr5 (376-417)||(19293431-19293472)
chr5 (364-417)||(25863214-25863267)
chr5 (296-345)||(43564951-43565000)
chr5 (296-344)||(17123119-17123166)
chr5 (296-344)||(19552476-19552524)
chr5 (376-416)||(21194213-21194253)
[»] scaffold0007 (1 HSPs)
scaffold0007 (298-417)||(225199-225317)
[»] scaffold0652 (1 HSPs)
scaffold0652 (297-347)||(403-453)
[»] chr1 (39 HSPs)
chr1 (296-417)||(6936334-6936449)
chr1 (296-417)||(40747707-40747822)
chr1 (364-417)||(42004943-42004996)
chr1 (296-347)||(46940748-46940799)
chr1 (296-417)||(9828054-9828174)
chr1 (296-417)||(20157284-20157399)
chr1 (295-356)||(22794017-22794078)
chr1 (296-344)||(5944365-5944413)
chr1 (365-417)||(39101179-39101231)
chr1 (295-346)||(19562555-19562605)
chr1 (298-345)||(42359391-42359438)
chr1 (296-417)||(17831462-17831580)
chr1 (296-346)||(18190048-18190098)
chr1 (296-346)||(40917829-40917879)
chr1 (301-346)||(1209822-1209867)
chr1 (298-346)||(1486646-1486694)
chr1 (297-345)||(10233326-10233374)
chr1 (298-346)||(17778622-17778670)
chr1 (296-339)||(7918154-7918197)
chr1 (298-345)||(16297223-16297270)
chr1 (296-346)||(6427544-6427594)
chr1 (296-346)||(9690213-9690263)
chr1 (296-342)||(21365992-21366038)
chr1 (296-342)||(22515827-22515873)
chr1 (375-417)||(36878471-36878513)
chr1 (296-346)||(37598900-37598950)
chr1 (297-346)||(6414932-6414981)
chr1 (376-417)||(6573999-6574040)
chr1 (297-346)||(16011290-16011339)
chr1 (366-407)||(21145487-21145528)
chr1 (301-346)||(23219608-23219653)
chr1 (296-345)||(29144320-29144369)
chr1 (296-332)||(9630561-9630597)
chr1 (299-347)||(11634066-11634114)
chr1 (190-222)||(17080901-17080933)
chr1 (296-340)||(22881567-22881611)
chr1 (295-339)||(27965939-27965983)
chr1 (190-222)||(43609838-43609870)
chr1 (296-344)||(47989579-47989627)
[»] scaffold0049 (1 HSPs)
scaffold0049 (297-417)||(56932-57052)
[»] scaffold0128 (1 HSPs)
scaffold0128 (297-345)||(32774-32822)
[»] scaffold0003 (2 HSPs)
scaffold0003 (296-355)||(236914-236973)
scaffold0003 (296-346)||(241674-241724)
[»] scaffold0598 (1 HSPs)
scaffold0598 (367-417)||(8052-8102)
[»] scaffold0199 (1 HSPs)
scaffold0199 (368-417)||(1959-2008)
[»] scaffold0793 (1 HSPs)
scaffold0793 (296-344)||(4821-4869)
[»] scaffold0020 (1 HSPs)
scaffold0020 (296-346)||(135263-135313)
[»] scaffold0019 (1 HSPs)
scaffold0019 (296-346)||(71805-71855)
[»] scaffold0086 (1 HSPs)
scaffold0086 (295-368)||(2987-3059)
[»] scaffold0450 (1 HSPs)
scaffold0450 (296-368)||(8564-8635)
[»] scaffold0008 (1 HSPs)
scaffold0008 (298-417)||(263303-263421)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 30780942 - 30781343
Alignment:
Q  18 gtttttggatacccttttgagaatgtaatggtatatcttctggggttgttttgatttcattgtttatatcgaaaatcaaggaaagatgaaaccttcactt 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780942 gtttttggatacccttttgcgaatgtaatggtatatcttctggggttgttttgatttcattgtttatatcgaaaatcaaggaaagatgaaaccttcactt 30781041  T
Q  118 aaagtgtatttcatgatagaggacgtgtctggcttccgacaggtgtcaatgtccgtcaccgatacaatag------------taacattcaattatgtta 205  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||            | ||||||||||||||||    
T  30781042 aaagtgtatttcatgatagaggacgtgtccggcttccgacaggtgtcaatgtccatcaccgatacaatagtgacacatgcgattacattcaattatgtta 30781141  T
Q  206 ttttctcaagttattatgggcgtctacttgttagtgtgcctgtgtttcatagcttgcagcaccaaca-tttctaatcgaagatgtgtttggctatgaagc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||    
T  30781142 ttttctcaagttattatgggcgtctacttgttagtgtgcctgtgtttcatagcttgcaacaccgacattttctaatcgaagatgtgtttggctatgaagc 30781241  T
Q  305 acgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcat 404  Q
    |||||||||||||||||||||||||||||||||           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  30781242 acgaacactcctcggattaagtgtgtcccggtg-----------tcagtgtctgatattgacaccgacatgacacctatgattacaattaattatgtcat 30781330  T
Q  405 tttctcaaattat 417  Q
    |||||||||||||    
T  30781331 tttctcaaattat 30781343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 34446690 - 34446575
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| |||||||| |||||| ||||||||| ||||| || |||| || |||| ||     |||||||||| |||||||||||||||||| ||    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgt-tg-----gacaccgacacgacacctatgattacactgaa 34446597  T
Q  396 ttatgtcattttctcaaattat 417  Q
    ||||||||||||||||||||||    
T  34446596 ttatgtcattttctcaaattat 34446575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 6389805 - 6389753
Alignment:
Q  365 acaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattat 6389753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 31959268 - 31959220
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 7625235 - 7625184
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgc 347  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  7625235 ctatgaagcacgaacactccttggattaagcgtgttccggtgtcggacacgc 7625184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 8389411 - 8389457
Alignment:
Q  299 tgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  8389411 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 8389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 8776908 - 8776958
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacg 8776958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 28152217 - 28152167
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacg 28152167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 34595253 - 34595203
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacg 34595203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 417
Target Start/End: Original strand, 34894967 - 34895083
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacactta 394  Q
    ||||||||||||| |||||||||  |||| ||||||||| |||||||||| |||| ||| || || | ||||||     ||||||||||||||||||| |    
T  34894967 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcattagtttccgaca-tgacac-----tgacacctatgattacactga 34895060  T
Q  395 attatgtcattttctcaaattat 417  Q
    ||| | | |||||||||||||||    
T  34895061 attgtataattttctcaaattat 34895083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 9107299 - 9107348
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  9107299 ctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacac 9107348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 17168459 - 17168512
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| ||||||||| |||||||| |||||| |||||||||||||||||    
T  17168459 gacaccgacacgacacctattattacactaaattatatcattttctcaaattat 17168512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 12235521 - 12235568
Alignment:
Q  370 gacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattat 12235568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 12086345 - 12086394
Alignment:
Q  368 ccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||| ||| |||||||||||| |||||||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattat 12086394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 19602177 - 19602230
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||  | ||||||||||||||| |||||| |||||||||||||||||    
T  19602177 gacaccgacacaatacctatgattacactgaattatatcattttctcaaattat 19602230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 32313535 - 32313463
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacac 368  Q
    |||||||||||| ||| | ||||| |||||||||||||||||| |||||  | ||||||||||| || |||||    
T  32313535 ctatgaagcacggacatttctcgggttaagtgtgtcccggtgttggacatacgtcagtgtctgacaccgacac 32313463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 3209518 - 3209471
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggac 343  Q
    ||||||||||| |||||||||||||||| | |||||| ||||||||||    
T  3209518 ctatgaagcacaaacactcctcggattaggcgtgtccgggtgtcggac 3209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 9024182 - 9024225
Alignment:
Q  374 tgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| |||||||||| | ||||||||||||||||||||||||    
T  9024182 tgacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 9025448 - 9025495
Alignment:
Q  299 tgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||| ||||| ||||||||| | ||||||||||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 9027287 - 9027236
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||| ||||||   ||||||||||||||||||||    
T  9027287 gctatgaagcacaaacactccttggattagccgtgtcccggtgtcggacacg 9027236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 16766828 - 16766777
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||| ||| || |||||||| | ||||||||||||||||||||    
T  16766828 gctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacg 16766777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 7938220 - 7938170
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||||| ||||||||||||| | | ||||| |||||||||||||    
T  7938220 gctatgaagcacggacactcctcggatcaggcgtgtctcggtgtcggacac 7938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 8365448 - 8365498
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| | ||||||||||||| | ||||||| ||||||||||||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacg 8365498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 9195761 - 9195803
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||    
T  9195761 gacacatataattacactaaattatgtcattttctcaaattat 9195803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 17327590 - 17327640
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||| ||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacg 17327640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 7248488 - 7248439
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||| ||||||||||||||    |||||||||||||||||||    
T  7248488 ctatgaagcacggacactcctcggatttgacgtgtcccggtgtcggacac 7248439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 7569176 - 7569217
Alignment:
Q  376 acacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattat 7569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 10339054 - 10339174
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgatt-acactta 394  Q
    |||||||||||| ||||||||| ||||| | ||||||| |||||||||| |  || ||||| || || ||||| |   |||||| ||| ||| ||||| |    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtc-gtgtccgacaccgacacggcactgacacatataattaacactga 10339152  T
Q  395 attatgtcattttctcaaatta 416  Q
    ||||||| ||||||||||||||    
T  10339153 attatgtgattttctcaaatta 10339174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 26247489 - 26247436
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| || ||||||||||| ||| || ||||||||||||| |||||||    
T  26247489 gacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattat 26247436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 31385048 - 31384999
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||| |||||||| |||||| | |||||||||||| |||||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccggtgtaggacacg 31384999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 17841530 - 17841578
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||| ||||||||||||||| | ||||| | |||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacac 17841578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 34541747 - 34541799
Alignment:
Q  365 acaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||||||| |||||||||| | |||| ||||||||| || ||||||    
T  34541747 acaccgacatgacacatatgattacattgaattttgtcattttttctaattat 34541799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 52369906 - 52369785
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| |||||||||||| || |||||||||||||| |||||||| || ||||| ||||| |||||||||| |||||||||||||||| | ||    
T  52369906 ctatgaagcacggacactcctcggaataggtgtgtcccggtgttggacacgcgtcggtgtccgataccgacaccgacacgacacctatgattacattgaa 52369807  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||    
T  52369806 ttatgtaattttctcaaattat 52369785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 25074915 - 25074799
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacactta 394  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |  ||||      | ||||||||||  || |||||||||||||| |    
T  25074915 gctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgt------cagacaccgacacaacgcctatgattacactca 25074822  T
Q  395 attatgtcattttctcaaattat 417  Q
    |||||||||||||||||||||||    
T  25074821 attatgtcattttctcaaattat 25074799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 21211413 - 21211298
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||||||||| || ||||| ||     ||||||||| |||||| || |||||||| ||    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtc-ga-----acaccgacacgacacccataattacactgaa 21211320  T
Q  396 ttatgtcattttctcaaattat 417  Q
     ||||| |||||||||||||||    
T  21211319 ctatgtaattttctcaaattat 21211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 40052431 - 40052381
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacacg 40052381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 413
Target Start/End: Complemental strand, 8903555 - 8903446
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacactta 394  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||  ||||      | | || ||||| ||||||||| ||||||| ||    
T  8903555 gctatgaagcacgaacactcctcggattaggtgtgtcccg--gtcggacacgcataggtgt------ccggcatcgacacgacacctataattacac-ta 8903465  T
Q  395 attatgtcattttctcaaa 413  Q
    | |||||||||||||||||    
T  8903464 aatatgtcattttctcaaa 8903446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 2408588 - 2408653
Alignment:
Q  294 ggctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctga 359  Q
    |||||||||||||| | ||||||  ||||| | |||||||||||||| ||||||||||||||||||    
T  2408588 ggctatgaagcacggagactccttagattaggcgtgtcccggtgtcgaacacgcatcagtgtctga 2408653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 12704653 - 12704706
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| |||||||||||||||| | |||||||||||||| |||||||||    
T  12704653 gacaccgacacgacacctatgattacattgaattatgtcattttttcaaattat 12704706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 34185052 - 34185101
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 25775624 - 25775576
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||||||||||||||| | |||||| |||||||||||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacacg 25775576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 3730167 - 3730214
Alignment:
Q  370 gacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattat 3730214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 8039338 - 8039216
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgaca-tgacacctatgattacactt 393  Q
    |||||||||||  ||||||||| |||||| ||||||||||| ||||||||||| |  || |  || ||||||| | |||  |||||||||||||||| |     
T  8039338 gctatgaagcataaacactccttggattaggtgtgtcccggagtcggacacgcgtttgtattcgacactgaca-caacaccgacacctatgattacattg 8039240  T
Q  394 aattatgtcattttctcaaattat 417  Q
    ||| ||| ||||||||||||||||    
T  8039239 aatcatgccattttctcaaattat 8039216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 27505371 - 27505320
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||| ||||||||||||||| |  |||||||||||||||||||    
T  27505371 gctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacg 27505320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 55401195 - 55401144
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||| ||||||||||||||| | ||||| ||||||||||||||    
T  55401195 gctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacg 55401144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 1830395 - 1830353
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||||||||||| |||||||||||||||| |||||||    
T  1830395 gacacctatgattacactgaattatgtcattttcttaaattat 1830353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 20691371 - 20691329
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  20691371 gacacatatgattacactgaattatgtcattttctcaaattat 20691329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 417
Target Start/End: Original strand, 24204983 - 24205090
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaatt 397  Q
    |||||||||| |||||||||| |||| | |||||| |||||||||||||| ||||||||            ||||| ||||| ||| ||||||||  |||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtc------------cgacacgacacttataattacactgtatt 24205070  T
Q  398 atgtcattttctcaaattat 417  Q
    ||||||||||||||||||||    
T  24205071 atgtcattttctcaaattat 24205090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 49651716 - 49651762
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    |||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  49651716 ctatgaagcacggacacttctcggattaggtgtgtcccggtgtcgga 49651762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 12100385 - 12100328
Alignment:
Q  299 tgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtc 356  Q
    |||||||||  ||||||||||| || ||||||||||||||||||||||| | ||||||    
T  12100385 tgaagcacgggcactcctcggactaggtgtgtcccggtgtcggacacgcgttagtgtc 12100328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 15864892 - 15864843
Alignment:
Q  368 ccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||||| |||||| ||||||| |||||||||    
T  15864892 ccgacacgacacctatgattacactaaattatatcattttttcaaattat 15864843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 25892523 - 25892470
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||| |||| |||||||||||||||||| |||||| ||||||||| |||||||    
T  25892523 gacactgacacgacacctatgattacactgaattatatcattttcttaaattat 25892470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 411
Target Start/End: Original strand, 4704220 - 4704335
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgaca-tgacacctatgattacactta 394  Q
    |||||| |||| |||| ||||| |||||  |||||||  |||| |||||||| | |||||| || || ||||| |||| || ||| |||||||||||| |    
T  4704220 ctatgacgcacaaacattcctcagattagatgtgtcctagtgttggacacgcgttagtgtcagacaccgacac-gacaatggcacatatgattacactga 4704318  T
Q  395 attatgtcattttctca 411  Q
    |||||||||||||||||    
T  4704319 attatgtcattttctca 4704335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 4987222 - 4987270
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||| ||| ||||||||||||||| | ||||||||||||||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacg 4987270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 20503584 - 20503536
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||||||||| | ||||||||||||| ||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagaca 20503536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 40993275 - 40993323
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||| | ||||||||||||||| | ||||||||||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggaca 40993323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 17276847 - 17276796
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||| ||||| ||||||||| ||| ||| ||||||||||||||    
T  17276847 gctatgaagcacggacacttctcggattaggtgcgtctcggtgtcggacacg 17276796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 21367340 - 21367289
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaatt 415  Q
    ||||||||||  ||| | ||||||||||| ||||||||||||||||||||||    
T  21367340 gacaccgacacaacaaccatgattacactaaattatgtcattttctcaaatt 21367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 8039764 - 8039884
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgaca-tgacacctatgattacactta 394  Q
    |||||||||||  | |||| |||||||||| |||||||||||||||||| |  ||| |||| || || |||| |||||  ||||| ||| |||||||| |    
T  8039764 ctatgaagcacagatactcttcggattaagcgtgtcccggtgtcggacatgtctca-tgtccgacaccgaca-cgacaccgacacatataattacactga 8039861  T
Q  395 attatgtcattttctcaaattat 417  Q
    ||||| | |||||||||||||||    
T  8039862 attatataattttctcaaattat 8039884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 11610628 - 11610578
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||| ||||| | |||||||| |||||||||||    
T  11610628 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacg 11610578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 13799556 - 13799518
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaa 413  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  13799556 gacacatattattacacttaattatgtcattttctcaaa 13799518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 16789584 - 16789634
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||| | |||||||| |||||| |||||||||| ||||||||||    
T  16789584 gctatgaagcatggacactcctaggattaggtgtgtcccgttgtcggacac 16789634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 18427068 - 18427018
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||| |||| ||||||||| ||||| ||||||||||||| ||||||||    
T  18427068 ctatgaaacacggacactcctcagattaggtgtgtcccggtgccggacacg 18427018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 21149111 - 21149077
Alignment:
Q  383 tgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| ||||||||||||||||||||||||    
T  21149111 tgattacactgaattatgtcattttctcaaattat 21149077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 25065037 - 25064987
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||| |||||||||||||||||||| ||  ||||||||||||| ||||||    
T  25065037 ctatggagcacgaacactcctcggataaaccgtgtcccggtgtcagacacg 25064987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 34189479 - 34189437
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||| ||||||||| || |||||||||||||||||||||    
T  34189479 gacacctacgattacactgaaatatgtcattttctcaaattat 34189437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 35223057 - 35223007
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||| ||| ||||||| ||||| ||||||    
T  35223057 ctatgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacg 35223007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 41961579 - 41961629
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||| ||||||||| | ||||||| ||||||||||||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacg 41961629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 3730108 - 3730149
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtg 337  Q
    |||||||||| | ||||||||||||||| |||||||||||||    
T  3730108 ctatgaagcatggacactcctcggattaggtgtgtcccggtg 3730149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 14217021 - 14216972
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||| ||||| ||||||||| ||||||||| |||||| |||||    
T  14217021 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacg 14216972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 14223150 - 14223101
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||| ||||| ||||||||| ||||||||| |||||| |||||    
T  14223150 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacg 14223101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 14223849 - 14223902
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| ||||| ||||| |||||| |||||| || ||||||||||||||    
T  14223849 gacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattat 14223902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 15999951 - 16000000
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||| ||||| |||||||| |||||| | ||||||||||||||||||||    
T  15999951 tatgatgcacggacactccttggattaggcgtgtcccggtgtcggacacg 16000000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 25365521 - 25365472
Alignment:
Q  368 ccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| ||||| |||||||||||  ||||||||||| ||||||||||||    
T  25365521 ccgacacgacacttatgattacaccgaattatgtcatattctcaaattat 25365472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 34307776 - 34307829
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| ||||| ||| |||||||| || ||||| |||||||||||||||    
T  34307776 gacaccgacacgacacttataattacactgaaatatgtgattttctcaaattat 34307829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 417
Target Start/End: Complemental strand, 1389956 - 1389836
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaat 396  Q
    ||||||||||| |||||||| |||||| |  ||||| |||||||||||| |||  || ||| | || ||| || ||| ||||| ||||||| ||   |||    
T  1389956 tatgaagcacggacactccttggattaggcatgtcctggtgtcggacacacattggtatctaacaccgaccccaacacgacacgtatgattccatagaat 1389857  T
Q  397 tatgtcattttctcaaattat 417  Q
    ||||| ||||| |||||||||    
T  1389856 tatgtgattttatcaaattat 1389836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcc 332  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 31243476 - 31243597
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    ||||||| ||| ||||||||||  |||| |||||||| ||||||| ||||||||| ||||| || ||  |||||||||||||||||||||||||||| ||    
T  31243476 ctatgaaccacaaacactcctcatattaggtgtgtcctggtgtcgaacacgcatcggtgtccgacaccaacaccgacatgacacctatgattacactgaa 31243575  T
Q  396 ttatgtcattttctcaaattat 417  Q
    ||||||||||||||||||||||    
T  31243576 ttatgtcattttctcaaattat 31243597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 417
Target Start/End: Original strand, 20743210 - 20743327
Alignment:
Q  300 gaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattat 399  Q
    |||||||| |||||| ||||||||  ||||| |||||||||||||||  || |||||||| |  ||||||||||  ||||||||||||||||| ||||||    
T  20743210 gaagcacggacactcatcggattagatgtgttccggtgtcggacacgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattat 20743309  T
Q  400 gtcattttctcaaattat 417  Q
    ||||||||||||||||||    
T  20743310 gtcattttctcaaattat 20743327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 417
Target Start/End: Complemental strand, 32910669 - 32910561
Alignment:
Q  309 acactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcattttc 408  Q
    ||||||||||||||| | |||||  |||||||||||||| ||||||||  |||| || |||||||| ||||| || |||||||| |||||||||||||||    
T  32910669 acactcctcggattaggcgtgtcatggtgtcggacacgcgtcagtgtccaataccgataccgacataacacccataattacactgaattatgtcattttc 32910570  T
Q  409 tcaaattat 417  Q
    |||||||||    
T  32910569 tcaaattat 32910561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 17876285 - 17876166
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||  |||||||| |||||| |||||||| ||||||||||| || || |||||||| || ||||| |||| | ||| |||||||||||| ||    
T  17876285 ctatgaagcacagacactccttggattaggtgtgtcctggtgtcggacaagcgtcggtgtctgacac-gacactgacacggcacatatgattacactaaa 17876187  T
Q  396 ttatgtcattttctcaaatta 416  Q
    |||||||||||||| ||||||    
T  17876186 ttatgtcattttctaaaatta 17876166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 24343632 - 24343517
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| ||||||||| || || | ||||||||||||||||||||| || ||||| ||      |||||||| ||||||||| |||||||| ||    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcgga------caccgacacgacacctataattacactgaa 24343539  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||    
T  24343538 ttatgtaattttctcaaattat 24343517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 53381530 - 53381590
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtc 356  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtc 53381590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 7012198 - 7012076
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacat-gacacctatgattacactt 393  Q
    ||||||||||||| |||||||||| |||| ||||  |||||||||||| |||| || ||||| || || |||||  |||  || ||||||||| |||||     
T  7012198 gctatgaagcacggacactcctcgcattaggtgttccccggtgtcggatacgcgtcggtgtccgacaccgacaca-acaccgatacctatgatcacactg 7012100  T
Q  394 aattatgtcattttctcaaattat 417  Q
    ||||||||||||||||||||||||    
T  7012099 aattatgtcattttctcaaattat 7012076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 3144587 - 3144701
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| ||||| ||||||||| ||||||| || ||| |||||||| |  ||||||||      |||||||| |||||||||||||||||| ||    
T  3144587 ctatgaagcacggacacttctcggattaggtgtgtctcg-tgttggacacgcgttggtgtctga------caccgacacgacacctatgattacactaaa 3144679  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||| ||||||||| |||||||    
T  3144680 ttatatcattttctgaaattat 3144701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 19482798 - 19482748
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacg 19482748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 19230241 - 19230358
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||| ||| |||||| ||||||||  ||||||| | ||||| ||||||||| |||||||| || |||||    | ||||||||| |||||| | ||    
T  19230241 ctatgaagtacggacactcttcggattagatgtgtcctgttgtcgaacacgcatccgtgtctgacaccgacac----acgacacctataattacattgaa 19230336  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||    
T  19230337 ttatgttattttctcaaattat 19230358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 39507059 - 39507168
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    ||||||||||  ||||||||||||| || ||||||| |||||||||||||| ||||||||            ||||||| ||||||||||||||||||||    
T  39507059 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgt------------ccgacataacacctatgattacacttaa 39507146  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||| ||||||||  |||||||    
T  39507147 ttatatcattttcataaattat 39507168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 23292926 - 23292976
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 23292976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 3947702 - 3947751
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacg 3947751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 10133828 - 10133755
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacacc 369  Q
    |||||||||| ||||  ||||| ||||| |||||||| |||||||||||||| ||||||||||| || ||||||    
T  10133828 ctatgaagcatgaacgttcctcagattaggtgtgtcctggtgtcggacacgcgtcagtgtctgacaccgacacc 10133755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 18513175 - 18513290
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| ||||||||| ||||| | |||||| |||||||||||| | || ||||| || ||  ||||     |||||| |||||||||| | ||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacaca-acac-----tgacacatatgattacattgaa 18513268  T
Q  396 ttatgtcattttctcaaattat 417  Q
    ||||||||||||||||||||||    
T  18513269 ttatgtcattttctcaaattat 18513290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 29205587 - 29205539
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggaca 29205539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 417
Target Start/End: Original strand, 944617 - 944717
Alignment:
Q  311 actcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcattttctc 410  Q
    ||||||| ||||| ||||||||||||||||||||||| || ||||  || ||||||||      ||||||||| |||||||| ||||  |||||| ||||    
T  944617 actcctcagattaggtgtgtcccggtgtcggacacgcgtctgtgttcgacactgacac------gacacctataattacactaaattgcgtcattatctc 944710  T
Q  411 aaattat 417  Q
    |||||||    
T  944711 aaattat 944717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 12895213 - 12895260
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||||    
T  12895213 gctatgaagcacgaacactcctcggattaggcgtgtcccgatgtcgga 12895260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 23386209 - 23386166
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcatttt 407  Q
    ||||||||||||||||||||||||||||| |||||| |||||||    
T  23386209 gacaccgacatgacacctatgattacactaaattatatcatttt 23386166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 40784072 - 40784029
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtc 339  Q
    |||||||||||| ||||||||||||||| |||||||||||||||    
T  40784072 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 40784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 6274036 - 6273954
Alignment:
Q  335 gtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| || ||  ||||||| || |||||||||| |||  |||| |||||||| |||||| |||||||||||||||||    
T  6274036 gtgtcggacatgcgtcgatgtctgacaccgacaccgacacgacgactataattacactaaattatatcattttctcaaattat 6273954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 16184950 - 16184896
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatc 350  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||||||| |||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtgtcccagtgtcggacaggcatc 16184896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 22234819 - 22234869
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||||||| |||||||||  ||||||| |||||||||||||    
T  22234819 ctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacg 22234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 30982808 - 30982924
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgaca-tgacacctatgattacacttaa 395  Q
    ||||||||||| |||||| | |||||| | ||||||||||||||||||||  || |||||||| || |||| |||||  ||||| ||| |||||||| ||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgaca-cgacaccgacacttataattacactgaa 30982905  T
Q  396 ttatgtcattttctcaaat 414  Q
     ||||| ||||||||||||    
T  30982906 atatgtgattttctcaaat 30982924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 715545 - 715593
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 752871 - 752919
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 28084640 - 28084593
Alignment:
Q  299 tgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||| ||||||||||||||| | ||||||| ||||||||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacg 28084593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 378 - 417
Target Start/End: Original strand, 49659533 - 49659572
Alignment:
Q  378 acctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattat 49659572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 5775365 - 5775407
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||    
T  5775365 gacacatataattacacttaattatgtgattttctcaaattat 5775407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 11931410 - 11931290
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacat-gacacctatgattacactta 394  Q
    |||||||||||| |||||||  |||||| |||||||| ||||||||||| || || ||||| ||||| ||||  ||||| ||||| |||  ||||||| |    
T  11931410 ctatgaagcacggacactccatggattaggtgtgtcctggtgtcggacatgcgtcggtgtc-gataccgaca-tgacatcgacacatatatttacactaa 11931313  T
Q  395 attatgtcattttctcaaattat 417  Q
    ||||||| ||||| ||| |||||    
T  11931312 attatgtgattttttcatattat 11931290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 34306744 - 34306794
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||||| ||||| ||||| | ||||| ||||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacg 34306794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 409
Target Start/End: Original strand, 34515877 - 34515915
Alignment:
Q  371 acatgacacctatgattacacttaattatgtcattttct 409  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  34515877 acatgacacctatgtttacactgaattatgtcattttct 34515915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 35161155 - 35161105
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| |||||  |||||||| |||||| |||||||||||||||    
T  35161155 ctatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacg 35161105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 5654599 - 5654640
Alignment:
Q  376 acacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| |||||||||| | ||||||||||||||||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattat 5654640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 46180944 - 46180985
Alignment:
Q  376 acacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| |||||||||||| |||||||| |||||||||||||||    
T  46180944 acacatatgattacactgaattatgttattttctcaaattat 46180985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 46715416 - 46715473
Alignment:
Q  299 tgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtc 356  Q
    |||||||||||||||||||||||||    ||| ||||||||||||||||  |||||||    
T  46715416 tgaagcacgaacactcctcggattagacatgtgccggtgtcggacacgcggcagtgtc 46715473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 47191001 - 47191042
Alignment:
Q  376 acacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||    
T  47191001 acacctaggattacactaaattatgtcattttcgcaaattat 47191042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 941365 - 941313
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgc 347  Q
    ||||||||||||| ||| || |||||||| |||||||| | ||||||||||||    
T  941365 gctatgaagcacggacagtcttcggattaggtgtgtcctgatgtcggacacgc 941313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 10546194 - 10546158
Alignment:
Q  381 tatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| | ||||||||||||||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattat 10546158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 11596297 - 11596345
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||| ||||| | |||||||| |||||||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggaca 11596345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 22440559 - 22440607
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||| ||||||||||||||| | ||||||  ||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacacg 22440607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 35157925 - 35157973
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||| ||||||||||| |||| ||||||| |||||    
T  35157925 ctatgaagcacggacacttctcggattaagcgtgttccggtgttggaca 35157973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 40699887 - 40699935
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    ||||||||||| ||||||||| ||||||  ||||||| |||||||||||    
T  40699887 ctatgaagcacaaacactcctgggattacatgtgtcctggtgtcggaca 40699935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 11307934 - 11308053
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| |||||||||||||||||||| ||  |||||||||||||| || |||||  | || |||||||||| |||||||||||||||||| ||    
T  11307934 ctatgaagcacggacactcctcggattaagtgtttc--ggtgtcggacacgcgtcggtgtccaacaccgacaccgacacgacacctatgattacactgaa 11308031  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||||||||||| |||||||||    
T  11308032 ttatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 10535685 - 10535808
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatac--tgacaccgacatgacacctatgattacactt 393  Q
    |||||||||||||||||||||||||||| | |||||| |||||| ||||| ||| |||||| || ||  || |||| ||| ||||| ||||||||||||     
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcctggtgtcagacacacattagtgtcggacactgtgtcaccaacacgacacttatgattacactg 10535784  T
Q  394 aattatgtcattttctcaaattat 417  Q
    ||||||||||||||||||||||||    
T  10535785 aattatgtcattttctcaaattat 10535808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 25544556 - 25544491
Alignment:
Q  352 gtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  25544556 gtgtctgacactgacaccgacacgacacctatgattacactgaattatatcattttctcaaattat 25544491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 417
Target Start/End: Original strand, 23354582 - 23354701
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaat 396  Q
    |||||| |||| ||||||||||||||| | |||||||| |||| |||||   || ||||| ||  | |||||||||| |||||||||||||||||| |||    
T  23354582 tatgaaccacggacactcctcggattaggcgtgtcccg-tgtcagacaccggtcggtgtccgaccccgacaccgacacgacacctatgattacactaaat 23354680  T
Q  397 tatgtcattttctcaaattat 417  Q
    ||| |||||||||||||||||    
T  23354681 tatatcattttctcaaattat 23354701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 417
Target Start/End: Original strand, 23354926 - 23355044
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaatt 397  Q
    |||||||| | ||||||||||||||| | |||||||| |||| ||||||  || |||||  |  | |||||||||||||||||||||||| |||| ||||    
T  23354926 atgaagcaaggacactcctcggattaggcgtgtcccg-tgtcagacacgggtcggtgtccaaccccgacaccgacatgacacctatgattgcactaaatt 23355024  T
Q  398 atgtcattttctcaaattat 417  Q
    || |||||||||||||||||    
T  23355025 atatcattttctcaaattat 23355044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 417
Target Start/End: Complemental strand, 24011148 - 24011046
Alignment:
Q  309 acactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcattttc 408  Q
    |||||| |||||||| |||||||  ||||||||||||||||| || || ||      |||||||  |||||||||||||||||| |||||||||||||||    
T  24011148 acactcttcggattatgtgtgtcttggtgtcggacacgcatccgtatcaga------caccgacgcgacacctatgattacactaaattatgtcattttc 24011055  T
Q  409 tcaaattat 417  Q
    |||||||||    
T  24011054 tcaaattat 24011046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 37419873 - 37419819
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatc 350  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc 37419819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 30563540 - 30563419
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    ||||||||||| |  |||||| |||||| |  ||||| ||||||||| |||| |  ||||| || |||||||||||||  ||||||||  ||||| | ||    
T  30563540 ctatgaagcacaagtactccttggattagggttgtcctggtgtcggatacgcctgggtgtccgacactgacaccgacacaacacctatagttacattgaa 30563441  T
Q  396 ttatgtcattttctcaaattat 417  Q
    ||||||||||||||||||||||    
T  30563440 ttatgtcattttctcaaattat 30563419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 38919336 - 38919216
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    ||||||||||| ||||||| || |||||   |||||| | |||||||||||||||||| || || || |||||  ||| |||||||||||||||||| ||    
T  38919336 ctatgaagcacaaacactcttcagattagacgtgtcctg-tgtcggacacgcatcagtatccgacaccgacactaacacgacacctatgattacactaaa 38919238  T
Q  396 ttatgtcattttctcaaattat 417  Q
     |||  ||||||||||||||||    
T  38919237 ctataacattttctcaaattat 38919216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 18622721 - 18622673
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||    
T  18622721 ctatgaagcacggacactcctcggattaagtgtgtcccggtgtaggaca 18622673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 18840953 - 18841001
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 18841001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 37559096 - 37559046
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  37559096 ctatgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacg 37559046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 2438661 - 2438707
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 2438707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 26769641 - 26769591
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacg 26769591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 34006998 - 34007040
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||||||||||| |||||||||| |||||||||||||    
T  34006998 gacacctatgattacactgaattatgtcaatttctcaaattat 34007040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 38117099 - 38117149
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| |||| |||||||||| | ||||||||||||||||||||    
T  38117099 ctatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacg 38117149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 12748735 - 12748694
Alignment:
Q  376 acacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  12748735 acacctatgattacactgaactatgtcattttctcaaattat 12748694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 44860449 - 44860401
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||| |||||||||| |||| |||||||||| ||||||||||    
T  44860449 tatgaagcacggacactcctcgaattaggtgtgtcccgatgtcggacac 44860401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 18571025 - 18570982
Alignment:
Q  374 tgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| |||||||||| | ||||||||||||||||||||||||    
T  18571025 tgacacatatgattacattgaattatgtcattttctcaaattat 18570982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 42511321 - 42511372
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||| |||||||||||||||   ||||||| ||||||||||||    
T  42511321 gctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacg 42511372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 8300226 - 8300264
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaa 413  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  8300226 gacacttatgattacactaaattatgtcattttctcaaa 8300264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 15972992 - 15972942
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||| || |||||||| ||||||||||| ||||||||||    
T  15972992 ctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacg 15972942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 41843565 - 41843515
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||  ||||||||||||| ||| ||||||| ||||||||||||    
T  41843565 ctatgaagcacagacactcctcggataaagcgtgtccccgtgtcggacacg 41843515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 15909570 - 15909619
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||||||||||| ||| |||| | ||||||| |||||||||||    
T  15909570 ctatgaagcacgaacactcttcgaattaggcgtgtccctgtgtcggacac 15909619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 19980795 - 19980746
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    ||||||||||| ||||||| ||||||||| ||||||| || |||||||||    
T  19980795 gctatgaagcatgaacacttctcggattaggtgtgtctcgatgtcggaca 19980746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 28596587 - 28596538
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||| ||||||||||||||| | ||||||  ||||||||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacg 28596538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 34993922 - 34993971
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||||||||||||| | |||| | ||||||| |||||||||||    
T  34993922 ctatgaagcacgaacactccttgaattaggcgtgtcccagtgtcggacac 34993971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 11223793 - 11223841
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||| ||||| | ||||||||||||| ||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 30394518 - 30394474
Alignment:
Q  366 caccgacatgacacctatgattacacttaattatgtcattttctc 410  Q
    |||| ||| |||||||||||||| ||| |||||||||||||||||    
T  30394518 caccaacaggacacctatgattatactgaattatgtcattttctc 30394474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 36281731 - 36281695
Alignment:
Q  381 tatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||||| |||||||| |||||||||||||||    
T  36281731 tatgattacactaaattatgtgattttctcaaattat 36281695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 44067644 - 44067526
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaatt 397  Q
    |||||||||| |||||||||| |||| | |||||| ||||||||||||||||||||||| || || |||||||||| ||||| ||| ||||||||  |||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacac-gacaccgacacgacacttataattacactgtatt 44067546  T
Q  398 atgtcattttctcaaattat 417  Q
    ||||||||||||||||||||    
T  44067545 atgtcattttctcaaattat 44067526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 417
Target Start/End: Original strand, 13009423 - 13009542
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaat 396  Q
    ||||||||||| || ||||| |||||| | |||||||| ||||||||| || || |||||||| ||  ||||||||| ||||| |||||||||||| |||    
T  13009423 tatgaagcacggacgctccttggattaggcgtgtcccg-tgtcggacaggcgtcggtgtctgacacctacaccgacacgacacttatgattacactaaat 13009521  T
Q  397 tatgtcattttctcaaattat 417  Q
    ||| |  ||||||||||||||    
T  13009522 tatattgttttctcaaattat 13009542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 29510233 - 29510284
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgc 347  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgc 29510284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 40064081 - 40063961
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtc-tgatactgacaccgacatgacacctatgattacactta 394  Q
    ||||| |||||| |||||||||||||||  |||||||||||||||||||| | || | | | || |   |||||||||| ||| |||||||||||| | |    
T  40064081 ctatgtagcacggacactcctcggattagatgtgtcccggtgtcggacacacgtcggcgacgtgttg--gacaccgacacgacgcctatgattacaatga 40063984  T
Q  395 attatgtcattttctcaaattat 417  Q
    |||||||||||||||||||||||    
T  40063983 attatgtcattttctcaaattat 40063961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 13845322 - 13845244
Alignment:
Q  339 cggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||| |||||||| || || ||||| |||| ||||||||||||||| || |||||| |||||||||||||||||    
T  13845322 cggacacgcgtcagtgtccgacaccgacacagacacgacacctatgattactctaaattatatcattttctcaaattat 13845244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 35431140 - 35431189
Alignment:
Q  368 ccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||||| || |||||||||||||||||||||    
T  35431140 ccgacacgacacctatgattacactaaaatatgtcattttctcaaattat 35431189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 39820548 - 39820439
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacactta 394  Q
    ||||||||||||| ||||| ||||||||| | ||||||| ||||||||||||| || ||||            |||||| |||||||||||||||||| |    
T  39820548 gctatgaagcacggacacttctcggattaggcgtgtccc-gtgtcggacacgcgtcggtgt------------ccgacacgacacctatgattacactaa 39820462  T
Q  395 attatgtcattttctcaaattat 417  Q
    ||||| |||||||||||||||||    
T  39820461 attatatcattttctcaaattat 39820439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 38487157 - 38487217
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtc 356  Q
    |||||||||||  ||||||||||||||| |||||||| |||||||||||||| || |||||    
T  38487157 ctatgaagcacagacactcctcggattatgtgtgtccgggtgtcggacacgcgtcggtgtc 38487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 28883880 - 28883927
Alignment:
Q  370 gacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  28883880 gacaagacacctatgattccactgaattatgtcattttctcaaattat 28883927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 22652107 - 22652057
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||||| |||||||||||||||   |||||||||||||||||||    
T  22652107 gctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 22652057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 1676771 - 1676722
Alignment:
Q  368 ccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||||| || |||||||||||| ||||||||    
T  1676771 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattat 1676722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 30067968 - 30068017
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||| |||||| |||||||| ||||||||| |||||||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacac 30068017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 926730 - 926778
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||| ||||||||||||| |||  |||||||||||||||||||    
T  926730 atgaagcacggacactcctcggataaagcatgtcccggtgtcggacacg 926778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 36450693 - 36450745
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgc 347  Q
    ||||||||||||  ||||||||||||||| | |||||| ||||||||||||||    
T  36450693 gctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgc 36450745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 221
Target Start/End: Original strand, 2723776 - 2723807
Alignment:
Q  190 acattcaattatgttattttctcaagttatta 221  Q
    ||||||||||||||||||||||||||||||||    
T  2723776 acattcaattatgttattttctcaagttatta 2723807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 3025604 - 3025561
Alignment:
Q  374 tgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| |||||||| |||||||| |||||||||||||||    
T  3025604 tgacacctataattacactgaattatgtgattttctcaaattat 3025561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 15816057 - 15816104
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    ||||||||||||| ||||| ||||||||| | ||||||||||||||||    
T  15816057 gctatgaagcacggacacttctcggattaggcgtgtcccggtgtcgga 15816104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 22850401 - 22850354
Alignment:
Q  370 gacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||| |||||| |||||| ||||||||||| ||||||||||||||    
T  22850401 gacatgaaacctataattacatttaattatgtctttttctcaaattat 22850354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 2035866 - 2035816
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgc 347  Q
    ||||||||||| || || ||||||||| |||| ||||||||||||||||||    
T  2035866 tatgaagcacggacgctactcggattaggtgtctcccggtgtcggacacgc 2035816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 8343446 - 8343396
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||  |||||| |||||||| | ||||||||||||||||||||    
T  8343446 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacg 8343396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 11944795 - 11944749
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    ||||||||||||||||||| |||||||| | ||||| ||||||||||    
T  11944795 ctatgaagcacgaacactcatcggattaggcgtgtctcggtgtcgga 11944749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 16641909 - 16641951
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgt 338  Q
    |||||||||||  ||||||||||||||| ||||||||||||||    
T  16641909 ctatgaagcacagacactcctcggattaggtgtgtcccggtgt 16641951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 18130504 - 18130581
Alignment:
Q  339 cggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||  || |||||||||||||  ||| ||||||||||| || |||||||||||| | |||||||||||| ||||    
T  18130504 cggacacgtgtcggtgtctgatactgt-accaacatgacacctctggttacacttaattgtatcattttctcaacttat 18130581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 26609758 - 26609812
Alignment:
Q  361 actgacaccgacatgacacctatgattacacttaattatgtcattttctcaaatt 415  Q
    ||||||||||||||| ||||||| |||||||| | |||| ||||||| |||||||    
T  26609758 actgacaccgacatgtcacctataattacactgagttatatcattttttcaaatt 26609812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 8343086 - 8343037
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||  |||||| |||||||| | |||||||||||||||||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 9402115 - 9402046
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactga 365  Q
    ||||||| ||||||||||||||| |||| || |||   ||||||||| ||||||||| |||||| |||||    
T  9402115 ctatgaaacacgaacactcctcgaattatgtatgtttaggtgtcggatacgcatcagcgtctgacactga 9402046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 14659639 - 14659708
Alignment:
Q  300 gaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacacc 369  Q
    ||||||||||| |||||| ||||| ||||||| |||||| |||||||| |  |||||||| || ||||||    
T  14659639 gaagcacgaactctcctcagattaggtgtgtctcggtgttggacacgcgttggtgtctgacaccgacacc 14659708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 17751775 - 17751730
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgg 341  Q
    ||||||||| || ||||||||||||||| | |||||||||||||||    
T  17751775 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcgg 17751730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 17760762 - 17760717
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgg 341  Q
    ||||||||| || ||||||||||||||| | |||||||||||||||    
T  17760762 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcgg 17760717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 22943302 - 22943339
Alignment:
Q  309 acactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  22943302 acactcctcggattaggcgtgtcccggtgtcggacacg 22943339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 24413498 - 24413570
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacac 368  Q
    ||||||||||||| ||||| |||||||||   |||||||| ||| ||||||||||| ||||| || ||||||||    
T  24413498 gctatgaagcacggacacttctcggattagacgtgtcccgctgttggacacgcatc-gtgtccgacactgacac 24413570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 26915236 - 26915285
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaa 413  Q
    |||||||||| ||||| | |||||||| | ||||||||||||||||||||    
T  26915236 gacaccgacacgacacttgtgattacattaaattatgtcattttctcaaa 26915285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 3454626 - 3454578
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    ||||||||||| |||||| |||||||||| |||||  ||||||||||||    
T  3454626 ctatgaagcacaaacacttctcggattaaatgtgtttcggtgtcggaca 3454578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 8017548 - 8017496
Alignment:
Q  365 acaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| |||| |||| ||||||||||||| |||||||||||||| ||| |||||    
T  8017548 acactgacacgacatctatgattacactcaattatgtcattttttcatattat 8017496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 12559119 - 12559155
Alignment:
Q  381 tatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||||| |||||| |||||||||||||||||    
T  12559119 tatgattacactgaattatatcattttctcaaattat 12559155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 13403225 - 13403177
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| |||||||| | |||||| ||||| ||||||||||||    
T  13403225 ctatgaagcacggacactccttgaattaagcgtgtctcggtgtcggaca 13403177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 16988030 - 16987990
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgt 338  Q
    |||||||||| ||||||||||||||| | ||||||||||||    
T  16988030 atgaagcacggacactcctcggattaggggtgtcccggtgt 16987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 29198492 - 29198528
Alignment:
Q  381 tatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| | ||||||||||||||||||||||||    
T  29198492 tatgattacattgaattatgtcattttctcaaattat 29198528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 30068037 - 30068077
Alignment:
Q  377 cacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| ||||| ||| ||||||||||||||||||||||||    
T  30068037 cacctacgattatactgaattatgtcattttctcaaattat 30068077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 34127171 - 34127215
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtc 339  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||    
T  34127171 gctatgaagcacggacactccttggattaggtgtgtccaggtgtc 34127215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 417
Target Start/End: Complemental strand, 43250118 - 43250003
Alignment:
Q  301 aagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatg 400  Q
    ||||||| |||||||||| |||| | |||||| |||||||||||||| |||||||| ||  | |||||||||| ||||| ||| ||||||||  ||||||    
T  43250118 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacgc-gacaccgacacgacacttataattacactgtattatg 43250020  T
Q  401 tcattttctcaaattat 417  Q
    |||||||||||||||||    
T  43250019 tcattttctcaaattat 43250003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 7133212 - 7133327
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| || |||||| ||||| ||||||||| ||||||||||||| || ||||| ||      ||||||||   |||||||||||||||| ||    
T  7133212 ctatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccga------caccgacacaccacctatgattacactgaa 7133305  T
Q  396 ttatgtcattttctcaaattat 417  Q
    ||||||||||||||||||||||    
T  7133306 ttatgtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 6490835 - 6490786
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  6490835 ctatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 416
Target Start/End: Complemental strand, 23930351 - 23930230
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtg------tcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgatta 388  Q
    ||||||||||||| ||||||| ||||||| ||||       ||||||||||||||||||||| || || ||      ||||||||  |||||||||||||    
T  23930351 gctatgaagcacggacactccacggattaggtgtaggtgtatcccggtgtcggacacgcatcggtatccga------caccgacacaacacctatgatta 23930258  T
Q  389 cacttaattatgtcattttctcaaatta 416  Q
    |||| |||||||||||||||||||||||    
T  23930257 cactgaattatgtcattttctcaaatta 23930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 29812660 - 29812713
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  29812660 gacaccgacacgacacctatgattacactaaattatatcattttctcaaattat 29812713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 32287404 - 32287452
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 32287452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 5938582 - 5938482
Alignment:
Q  311 actcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaattatgtcattttctc 410  Q
    ||||||| ||||| |||||| ||||||||||||||||||| ||||      ||||||||||||  |||||||| |||| ||| |||||||| ||||| ||    
T  5938582 actcctcagattaggtgtgttccggtgtcggacacgcatcggtgt------ctgacaccgacacaacacctataattatactgaattatgttattttatc 5938489  T
Q  411 aaattat 417  Q
    |||||||    
T  5938488 aaattat 5938482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 14729823 - 14729772
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  14729823 gctatgaagtacggacactcctcggattaagcgtgtcccggtgtcggacacg 14729772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 5409771 - 5409821
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 5409821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 598329 - 598277
Alignment:
Q  294 ggctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||| ||||| ||||||||| | ||||||||||||||||||||    
T  598329 ggctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 598277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 43027402 - 43027454
Alignment:
Q  294 ggctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||| |||||| |||||||| | ||||||||||||||||||||    
T  43027402 ggctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacg 43027454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 32093954 - 32094005
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgt-cccggtgtcggacacg 346  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  32093954 ctatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacg 32094005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 9778624 - 9778574
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| |||||||| |||||| | ||||||||||||||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacg 9778574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 17852119 - 17852069
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| |||||||||| |||| ||||||| ||||||||||||||    
T  17852119 ctatgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacg 17852069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 24105798 - 24105748
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||| |||||||||||| ||| | |||||||||||||||||||    
T  24105798 gctatgaagcacaaacactcctcgggttaggcgtgtcccggtgtcggacac 24105748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 38804489 - 38804604
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||  ||||||||||||||| |  |||||||| ||||||||| | || ||||| ||      |||| ||| ||||||||||||||| ||  |    
T  38804489 ctatgaagcacatacactcctcggattaggcatgtcccggcgtcggacacacgtcggtgtccga------caccaacacgacacctatgattaccctgga 38804582  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||||||||||||| |||||||    
T  38804583 ttatgtcattttctgaaattat 38804604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 18233605 - 18233646
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaatta 416  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  18233605 gacacctataattacactgaattatgtcattttctcaaatta 18233646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 23751959 - 23751910
Alignment:
Q  368 ccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||||| |||||| ||||||| |||||||||    
T  23751959 ccgacacgacacctatgattacactaaattatatcattttatcaaattat 23751910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 417
Target Start/End: Complemental strand, 32308249 - 32308130
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgaca-tgacacctatgattacacttaa 395  Q
    ||||||||| |||||||||||||||||  |||||| |||||||||||| |  || |||||  | || |||| ||||| |||||| ||  |||||||| ||    
T  32308249 tatgaagcatgaacactcctcggattagctgtgtctcggtgtcggacatgtgtc-gtgtccaacaccgaca-cgacactgacacatacaattacactgaa 32308152  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||    
T  32308151 ttatgtgattttctcaaattat 32308130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 22868164 - 22868116
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||| | ||||||||||||||| ||||||||||||||| ||||||    
T  22868164 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacg 22868116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 2533761 - 2533804
Alignment:
Q  299 tgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||    
T  2533761 tgaagcacgaacactcctcggattacgcgtgtcccggcgtcgga 2533804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 21138931 - 21138986
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatca 351  Q
    ||||||||||||||||||||   ||||||| |||||| ||||||||||||| ||||    
T  21138931 ctatgaagcacgaacactcccttgattaagcgtgtcctggtgtcggacacgtatca 21138986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 29763128 - 29763179
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||| ||||||||||||||| | |||||| | |||||||||||    
T  29763128 gctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacg 29763179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 1433579 - 1433529
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||||| |||||||||||||||   |||||| ||||||||||||    
T  1433579 gctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacac 1433529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 24339772 - 24339726
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    ||||||||||||  |||||||||||||| | ||||||||||||||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcgga 24339726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 37776035 - 37775993
Alignment:
Q  374 tgacacctatgattacacttaattatgtcattttctcaaatta 416  Q
    |||||| | |||||||| |||||||||||||||||||||||||    
T  37776035 tgacacatgtgattacatttaattatgtcattttctcaaatta 37775993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 38134413 - 38134455
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||| |||||||||| | ||||||||||||||||||||||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaattat 38134455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 4017790 - 4017843
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| ||| ||||| |||||||||||| |||||| || ||||||||||||||    
T  4017790 gacaccaacacgacacttatgattacactaaattatatcgttttctcaaattat 4017843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 12278894 - 12278845
Alignment:
Q  368 ccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| ||||| ||| |||||||| |||||||||||||||| |||||||    
T  12278894 ccgacacgacacatataattacactgaattatgtcattttcttaaattat 12278845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 17780080 - 17780133
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| ||||||||| ||||||   |||||||||||||||| |||||||    
T  17780080 gacaccgacacgacacctattattacatagaattatgtcattttcttaaattat 17780133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 30813917 - 30813864
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgca 348  Q
    ||||||||||||| ||||||||||||||| | |||| | | |||||||||||||    
T  30813917 gctatgaagcacggacactcctcggattaggcgtgttctgatgtcggacacgca 30813864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 16341538 - 16341506
Alignment:
Q  385 attacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||||||||| |||||||||||||||    
T  16341538 attacacttaattatgtgattttctcaaattat 16341506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 21880271 - 21880223
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||| ||||||||| | |||||| |||||||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggaca 21880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 26033392 - 26033440
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||| |||| ||||||||||||||| ||||||| |||| |||||||||    
T  26033392 atgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacg 26033440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 40287306 - 40287350
Alignment:
Q  300 gaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||| ||||||||||||||| |  |||||||||||||||||    
T  40287306 gaagcacggacactcctcggattaggcatgtcccggtgtcggaca 40287350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 417
Target Start/End: Complemental strand, 2419988 - 2419867
Alignment:
Q  294 ggctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacactt 393  Q
    |||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||  |||| |   ||||||  |||||||||||     
T  2419988 ggctatgaagcacggacactcatcggattaggtgtgtcccggggtcggacacgcatcggtgtctgacaccaacacggcactgacac--atgattacactg 2419891  T
Q  394 aattatgtcattttctcaaattat 417  Q
    |||| ||| |||||||||||||||    
T  2419890 aattgtgtaattttctcaaattat 2419867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 39695995 - 39696048
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  39695995 gacaccgacacgacacctatgattacactaaattatatcattttctcaaattat 39696048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 43554584 - 43554531
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  43554584 gacaccgacacgacacctatgattacactaaattatatcattttctcaaattat 43554531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 413
Target Start/End: Original strand, 26205694 - 26205805
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| ||||   | |||||| |||||||||||||||||| |||| |  ||||| ||      |||| ||| |||||||||||||||||| ||    
T  26205694 ctatgaagcacggacaccttttggattacgtgtgtcccggtgtcggatacgcgttggtgtccga------caccaacacgacacctatgattacactgaa 26205787  T
Q  396 ttatgtcattttctcaaa 413  Q
    ||||||||||||||||||    
T  26205788 ttatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 17393305 - 17393354
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||||||| ||||||||||| | |||||||||||||||||||    
T  17393305 ctatgaagcacgaacattcctcggattacgagtgtcccggtgtcggacac 17393354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 38464313 - 38464361
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 2437031 - 2436980
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||||||||||||||||||| | |||||  |||||||||||||    
T  2437031 gctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacacg 2436980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 17593662 - 17593713
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||| |||||||    
T  17593662 gctatgaagtacggacactcctcggattaagcgtgtcccggtgttggacacg 17593713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 31264495 - 31264448
Alignment:
Q  370 gacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattat 31264448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 5467973 - 5468027
Alignment:
Q  363 tgacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||| ||||||||| |||||||| |||||||| ||||| |||||||||    
T  5467973 tgacaccgacacgacacctataattacactgaattatgtgattttatcaaattat 5468027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 14873641 - 14873591
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| | |||||||||||| |||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcccggtgttggacacg 14873591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 21576682 - 21576735
Alignment:
Q  293 tggctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||||| ||||||||||||||| | ||||||| ||||| ||||||    
T  21576682 tggctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacg 21576735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 2577193 - 2577229
Alignment:
Q  381 tatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||||||||| ||||||||||||||||||||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattat 2577229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 18607094 - 18607146
Alignment:
Q  365 acaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| |||| |||||||||||||||| | |||||||| |||||||||||||||    
T  18607094 acacagacacgacacctatgattacattgaattatgttattttctcaaattat 18607146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 19820328 - 19820376
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||| ||||| | ||||||||||||||||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 21190998 - 21191046
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||| ||||||||||||||| | ||||||||| ||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacacg 21191046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 21577117 - 21577157
Alignment:
Q  377 cacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  21577117 cacctattattacacttaattatgttattttctcaaattat 21577157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 18288053 - 18288100
Alignment:
Q  370 gacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  18288053 gacatgacacctatgattatactgagttaagtcattttctcaaattat 18288100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 37328775 - 37328822
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggac 343  Q
    |||||||||||| ||||||||||||||||| || ||||||| ||||||    
T  37328775 ctatgaagcacggacactcctcggattaagcgtatcccggtatcggac 37328822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 42469270 - 42469231
Alignment:
Q  378 acctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattat 42469231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 7997108 - 7997166
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtc 356  Q
    ||||||||| |||||| |||| |||| |||||||| | |||||||||||| ||||||||    
T  7997108 atgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtc 7997166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 17088402 - 17088360
Alignment:
Q  304 cacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||| ||||||||||||||| | ||||||||||||||||||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggacacg 17088360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 21137749 - 21137699
Alignment:
Q  367 accgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||| ||||||||||||| |||| ||||| |||||||||||| |||||    
T  21137749 accgacacgacacctatgatttcactgaattacgtcattttctcagattat 21137699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 28588681 - 28588723
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  28588681 gacacctataattacactgaattatgtgattttctcaaattat 28588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 30098456 - 30098406
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||| ||||||||||| |||||||| |||||| ||||||    
T  30098456 ctatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacg 30098406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 35017162 - 35017112
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| | |||||||| ||| |||||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtgtcccgatgttggacacg 35017112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 39268541 - 39268587
Alignment:
Q  299 tgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 39268587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 39698671 - 39698625
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    |||||||||||| ||||||||||||||| | ||||| ||||||||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcgga 39698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 7677836 - 7677787
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    ||||||||||||  || |||||||||||| | ||||||||||||||||||    
T  7677836 gctatgaagcaccgactctcctcggattaggcgtgtcccggtgtcggaca 7677787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 19293431 - 19293472
Alignment:
Q  376 acacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||| ||||||||||||||||||||| ||||||| |||||||    
T  19293431 acacatatgattacacttaattatgttattttcttaaattat 19293472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 25863267 - 25863214
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||| |||| ||||| ||| |||||||| |||||| |||||||||||||||||    
T  25863267 gacactgacacgacacttataattacactgaattatatcattttctcaaattat 25863214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 43565000 - 43564951
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||| ||||| ||||||||| | ||||||||| |||||||||    
T  43565000 ctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacac 43564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 17123166 - 17123119
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtccc-gtgtcggaca 17123119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 19552476 - 19552524
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    ||||||| |||| ||||||||||||||| ||||||||  ||||||||||    
T  19552476 ctatgaaacacggacactcctcggattaggtgtgtccaagtgtcggaca 19552524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 21194213 - 21194253
Alignment:
Q  376 acacctatgattacacttaattatgtcattttctcaaatta 416  Q
    ||||| ||||||||||| |||||||| ||||||||||||||    
T  21194213 acaccaatgattacactgaattatgtgattttctcaaatta 21194253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 417
Target Start/End: Original strand, 225199 - 225317
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaatt 397  Q
    |||||||||| |||||||||| |||| | |||||| ||||||| |||||| |||||||| || || |||||| ||| ||||| ||| |||||| |  |||    
T  225199 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcgaacacgcgtcagtgtccgacac-gacaccaacacgacacttataattacattgtatt 225297  T
Q  398 atgtcattttctcaaattat 417  Q
    ||||||||||||||||||||    
T  225298 atgtcattttctcaaattat 225317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 403 - 453
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgc 347  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgc 453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 6936334 - 6936449
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||| | ||||||||||||||||| || | | ||||||||| | || || ||||| || || |||||      |||||||||||||||||||||    
T  6936334 ctatgaagcatggacactcctcggattaagggtattctggtgtcggatatgcgtcggtgtccgacacagacac------gacacctatgattacacttaa 6936427  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||||||||||||||| |||||    
T  6936428 ttatgtcattttctcagattat 6936449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 40747707 - 40747822
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| || |||||||||||| | ||||||| |||| ||||| | ||| ||||| ||      |||| ||||||||||||| |||||| | ||    
T  40747707 ctatgaagcacggacgctcctcggattaggggtgtccctgtgtgggacatggatcggtgtccga------caccaacatgacacctataattacattgaa 40747800  T
Q  396 ttatgtcattttctcaaattat 417  Q
    ||||||||||||||||||||||    
T  40747801 ttatgtcattttctcaaattat 40747822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 42004943 - 42004996
Alignment:
Q  364 gacaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  42004943 gacaccgacacaacacctatgattacactaaattatgtcattttctcaaattat 42004996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 46940748 - 46940799
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgc 347  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  46940748 ctatgaagcacgaacactcctcggattaggcgtgttccggtgtcggacacgc 46940799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 9828174 - 9828054
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgaca-tgacacctatgattacactta 394  Q
    |||||||||||| |||||||||||||||   ||||||||||||||||||||  || |||||||| || |||| |||||  ||||| ||  |||||||| |    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtc-gtgtctgacacggaca-cgacaccgacacataaaattacactga 9828077  T
Q  395 attatgtcattttctcaaattat 417  Q
    ||||||| ||||| |||||||||    
T  9828076 attatgtgattttatcaaattat 9828054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 20157284 - 20157399
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    |||||||||||| | |||||||  |||| ||||||| ||||||||||||||| || ||||| || || ||||||     ||||| |||||||||||| ||    
T  20157284 ctatgaagcacggatactcctcaaattaggtgtgtctcggtgtcggacacgcgtcggtgtcggacac-gacacc-----gacacatatgattacactgaa 20157377  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||||| ||||||||| |||||    
T  20157378 ttatgtgattttctcacattat 20157399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 22794017 - 22794078
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtc 356  Q
    ||||||||||||| |||||||||| |||| ||||||||||| |||||||| || ||||||||    
T  22794017 gctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtc 22794078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 5944413 - 5944365
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||||||||||||||||||| | || |||||||||||||||    
T  5944413 ctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggaca 5944365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 39101179 - 39101231
Alignment:
Q  365 acaccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||| | ||||||||| ||||||||||||||||| |||||||||||||||    
T  39101179 acaccgaaacgacacctataattacacttaattatgttattttctcaaattat 39101231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 19562555 - 19562605
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  19562555 gctatgaagcacga-cactcctcggattaggtgtgtccctgtgtcggacacg 19562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 42359391 - 42359438
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 42359438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 17831462 - 17831580
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgacatgacacctatgattacacttaa 395  Q
    ||||||| || | ||||||||  ||||| | |||||||||||||||||||   || ||||| || |||||||| |||  ||||| |||||||||||| ||    
T  17831462 ctatgaaacatggacactcctaagattaggcgtgtcccggtgtcggacacatgtcggtgtccgacactgacac-gac--gacacatatgattacactgaa 17831558  T
Q  396 ttatgtcattttctcaaattat 417  Q
    | |||| |||||||||||||||    
T  17831559 taatgtgattttctcaaattat 17831580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 18190048 - 18190098
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||| |  ||||||||||||||| ||||||||||||||||||||||    
T  18190048 ctatgaagcgcatacactcctcggattaggtgtgtcccggtgtcggacacg 18190098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 40917879 - 40917829
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||| ||||||||||| | ||||||||||||||||||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacg 40917829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 1209867 - 1209822
Alignment:
Q  301 aagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||    
T  1209867 aagcacgaacacttctcggattaggtgtgtcctggtgtcggacacg 1209822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 1486646 - 1486694
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||  ||||||||||||||| | ||||||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacg 1486694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 10233374 - 10233326
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||| ||||||||| ||||| |||||||| ||||||||||||    
T  10233374 tatgaagcacggacactcctctgattaggtgtgtcctggtgtcggacac 10233326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 17778670 - 17778622
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacacg 17778622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 7918154 - 7918197
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtc 339  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||    
T  7918154 ctatgaagcacggacactcctcggattaggtgtgtcctggtgtc 7918197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 16297223 - 16297270
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||| ||||||||||||||| | |||||| ||||||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacac 16297270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 6427594 - 6427544
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| |||||| || ||||| | ||||||||||||||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacg 6427544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 9690213 - 9690263
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||| |||||||  ||||||| | ||||||||||||||||||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacg 9690263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 21365992 - 21366038
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    |||||||||||| ||||||||||||||| | ||||| ||||||||||    
T  21365992 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcgga 21366038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 22515827 - 22515873
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcgga 342  Q
    |||||||||||| ||||||||||||||| | ||||| ||||||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcgga 22515873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 36878513 - 36878471
Alignment:
Q  375 gacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  36878513 gacacctataattacactgaattatgtgattttctcaaattat 36878471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 37598950 - 37598900
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||||||||||||| | |||||||  |||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacg 37598900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 6414932 - 6414981
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||| ||||||||||||| || |||||| ||||||| ||||||    
T  6414932 tatgaagcacggacactcctcggatgaaatgtgtcgcggtgtcagacacg 6414981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 6574040 - 6573999
Alignment:
Q  376 acacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||||||||||||| |||||| ||||| |||||||||||    
T  6574040 acacctatgattacactaaattatatcattgtctcaaattat 6573999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 16011339 - 16011290
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||||| || ||| ||||||||||||  |||||||||||||    
T  16011339 tatgaagcacgaacattcttcgaattaagtgtgtcatggtgtcggacacg 16011290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 21145528 - 21145487
Alignment:
Q  366 caccgacatgacacctatgattacacttaattatgtcatttt 407  Q
    |||||||| ||| |||||||||||||| ||||||||||||||    
T  21145528 caccgacacgacgcctatgattacactgaattatgtcatttt 21145487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 23219608 - 23219653
Alignment:
Q  301 aagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||| |||||| ||||||||| ||||||| ||||||||||||||    
T  23219608 aagcacaaacacttctcggattaggtgtgtcacggtgtcggacacg 23219653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 29144320 - 29144369
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    |||||||||||| |||||| |||||||| | |||| ||||||||||||||    
T  29144320 ctatgaagcacggacactcttcggattaggcgtgttccggtgtcggacac 29144369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 9630561 - 9630597
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcc 332  Q
    |||||||||||||||||||||||||||| | ||||||    
T  9630561 ctatgaagcacgaacactcctcggattaggcgtgtcc 9630597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 11634066 - 11634114
Alignment:
Q  299 tgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgc 347  Q
    ||||||||| |||||| |||||||  |||||||| ||||||||||||||    
T  11634066 tgaagcacggacactcttcggatttggtgtgtcctggtgtcggacacgc 11634114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 17080901 - 17080933
Alignment:
Q  190 acattcaattatgttattttctcaagttattat 222  Q
    ||||||||||||||||||||||||| |||||||    
T  17080901 acattcaattatgttattttctcaaattattat 17080933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 22881567 - 22881611
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcg 340  Q
    |||||||||||| |||||||||||||||   ||||||||||||||    
T  22881567 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcg 22881611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 27965939 - 27965983
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtc 339  Q
    ||||||||||| | ||||||||||||||| | |||||||||||||    
T  27965939 gctatgaagcatggacactcctcggattaggcgtgtcccggtgtc 27965983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 43609838 - 43609870
Alignment:
Q  190 acattcaattatgttattttctcaagttattat 222  Q
    ||||||||||||||||||||||||| |||||||    
T  43609838 acattcaattatgttattttctcaaattattat 43609870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 47989627 - 47989579
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||||||||| | |||||||| |||| ||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagaca 47989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 417
Target Start/End: Complemental strand, 57052 - 56932
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgaca-tgacacctatgattacacttaa 395  Q
    |||||||||| |||||||||| ||||| |||| | |||||||| |||||||||  || || |  || ||||| |||| |||||| |||||||||||| ||    
T  57052 tatgaagcacaaacactcctcagattaggtgttttccggtgtcagacacgcattggtctccgtcaccgacac-gacactgacacttatgattacactgaa 56954  T
Q  396 ttatgtcattttctcaaattat 417  Q
    |||| |||||||||||||||||    
T  56953 ttatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 32822 - 32774
Alignment:
Q  297 tatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacac 345  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  32822 tatgaagcaccgacactcctcggattatgtgtgtcccggtgtcggacac 32774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 236914 - 236973
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgt 355  Q
    |||||||||||  ||||||||| ||||| ||||||||||||||| |||||||||| ||||    
T  236914 ctatgaagcacagacactcctcagattaggtgtgtcccggtgtcagacacgcatccgtgt 236973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 241724 - 241674
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||| ||||| ||||||||| | ||||||||||||||||||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 241674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 8052 - 8102
Alignment:
Q  367 accgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    ||||||| || ||||||| ||||||| ||||||||||||||||||||||||    
T  8052 accgacacgatacctatgtttacactgaattatgtcattttctcaaattat 8102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 2008 - 1959
Alignment:
Q  368 ccgacatgacacctatgattacacttaattatgtcattttctcaaattat 417  Q
    |||||| |||||||||||||||||| || |||||||||||| ||||||||    
T  2008 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattat 1959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 4821 - 4869
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggaca 344  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 135263 - 135313
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    ||||||||||||||||| |||| ||||| | |||||| |||||||||||||    
T  135263 ctatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggacacg 135313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 71855 - 71805
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacg 346  Q
    |||||||||||  |||||||||||||||   ||||||||||||||||||||    
T  71855 ctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacg 71805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 3059 - 2987
Alignment:
Q  295 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacac 368  Q
    |||||| |||||| ||||||||||||||| | |||| ||||||||| |||||  || ||||||||||| |||||    
T  3059 gctatggagcacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtc-gtgtctgataccgacac 2987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 8564 - 8635
Alignment:
Q  296 ctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacac 368  Q
    |||||||||||| |||||||||| |||| | |||| || |||||||||||| ||| ||||| ||||| |||||    
T  8564 ctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacacgtatc-gtgtccgataccgacac 8635  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 417
Target Start/End: Original strand, 263303 - 263421
Alignment:
Q  298 atgaagcacgaacactcctcggattaagtgtgtcccggtgtcggacacgcatcagtgtctgatactgacaccgaca-tgacacctatgattacacttaat 396  Q
    ||||| |||| ||||||||||||||| | |||||  ||| ||| |||||  || |||||||| || ||||| |||| |||||| ||| |||||||| |||    
T  263303 atgaaccacggacactcctcggattaggcgtgtcttggtatcgaacacgtgtc-gtgtctgacaccgacac-gacactgacacttataattacactgaat 263400  T
Q  397 tatgtcattttctcaaattat 417  Q
    |||||  ||||||||||||||    
T  263401 tatgtggttttctcaaattat 263421  T

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