View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8593_low_5 (Length: 392)

Name: NF8593_low_5
Description: NF8593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8593_low_5
NF8593_low_5
[»] chr1 (3 HSPs)
chr1 (1-376)||(10420036-10420411)
chr1 (258-351)||(10415175-10415268)
chr1 (1-92)||(10409736-10409827)
[»] chr5 (12 HSPs)
chr5 (1-376)||(35367213-35367581)
chr5 (1-89)||(35755167-35755255)
chr5 (208-351)||(35755392-35755535)
chr5 (258-351)||(35371099-35371192)
chr5 (158-351)||(35425911-35426104)
chr5 (230-346)||(35386583-35386699)
chr5 (1-74)||(35376765-35376838)
chr5 (1-74)||(35424024-35424097)
chr5 (1-69)||(35411026-35411094)
chr5 (230-346)||(35411229-35411345)
chr5 (268-376)||(35377062-35377170)
chr5 (1-69)||(35386365-35386433)
[»] chr7 (2 HSPs)
chr7 (249-376)||(29622704-29622831)
chr7 (1-75)||(29622892-29622965)
[»] chr3 (2 HSPs)
chr3 (258-337)||(1154273-1154352)
chr3 (25-69)||(1154061-1154105)
[»] chr2 (3 HSPs)
chr2 (6-71)||(30626429-30626493)
chr2 (6-71)||(30663380-30663444)
chr2 (6-71)||(30672060-30672124)
[»] chr8 (4 HSPs)
chr8 (34-88)||(15294135-15294191)
chr8 (34-88)||(15474504-15474560)
chr8 (289-350)||(15294360-15294421)
chr8 (289-350)||(15474729-15474790)


Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 10420411 - 10420036
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttctatcacttatttgttactgtcgtttagac 100  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10420411 agtaaagatcaagttaattcttccacaatcaagggaagtataggatatgttcctcctggtaaagttctttctatcacttatttgttactgtcgtttagac 10420312  T
Q  101 tttagaatgtcttgccgatctttaacaaaattttagtaattttctcattttaataataatgatttgcttataatcagtatgcatcagtatttgatatata 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  10420311 tttagaatgtcttgcctatctttaacaaaattttagtaattttctcattctaataataatgatttgcttataaacagtatgcgtcagtatttgatatata 10420212  T
Q  201 ctccaacccttaattattttgctaatgaattgttgttatttgaatagaatatggagtaggtgttccagtatctccccagggagatgtttacagctttggg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10420211 ctccaacccttaattattttgctaatgaattgttgttatttgaatagaatatggagcaggtgttccagtatctccccagggagatgtttacagctttggg 10420112  T
Q  301 attctcttgttagagatgctcaccggaaagagaccaatagataacatgtttagccagaatcttagccttcacaaat 376  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10420111 attctcttgttagagatgctcactggaaagagaccaacagataacatgtttagccagaatcttagccttcacaaat 10420036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 258 - 351
Target Start/End: Complemental strand, 10415268 - 10415175
Alignment:
Q  258 aggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcaccggaaagagaccaatagataacatgttt 351  Q
    ||||||||||||||| || ||||||||| | || ||||||||||||||  |||||||||||||||| ||||||||||||| | |||||||||||    
T  10415268 aggtgttccagtatcaccacagggagatatctatagctttgggattcttctgttagagatgctcactggaaagagaccaacaaataacatgttt 10415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 10409827 - 10409736
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttctatcacttatttgttactgtc 92  Q
    |||||||||||||||| ||  |  ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||    
T  10409827 agtaaagatcaagttatttcctctacaattaagggaactataggatatgttcctcccggtaaagttctttttatcacttatttatttctgtc 10409736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 35367213 - 35367581
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttctatcacttatttgttactgtcgtttagac 100  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       
T  35367213 agtaaagatcaagttaattcttccacaattaagggaactataggatatgttcctcctggtaaagttctttctatcacttatttgttactgtcattta--- 35367309  T
Q  101 tttagaatgtcttgccgatctttaacaaaattttagtaattttctcattttaataataatgatttgcttataatcagtatgcatcagtatttgatatata 200  Q
        |||||||||||| |||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||    
T  35367310 ----gaatgtcttgccaatctttaacaaaattttagtaattttctcattctaataaatttgatttgcttataatcagtatgcatcagtatttgatatata 35367405  T
Q  201 ctccaacccttaattattttgctaatgaattgttgttatttgaatagaatatggagtaggtgttccagtatctccccagggagatgtttacagctttggg 300  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  35367406 ctccaaccgttaattattttgctaaagaattgttgttatttgaatagaatatggagcaggtgttccagtatctccacagggagatgtttacagctttggg 35367505  T
Q  301 attctcttgttagagatgctcaccggaaagagaccaatagataacatgtttagccagaatcttagccttcacaaat 376  Q
    |||||  |||||||||||||||| ||||||||||||| ||||| ||||||| || |||||||||||||||||||||    
T  35367506 attctactgttagagatgctcactggaaagagaccaacagatagcatgttttgcgagaatcttagccttcacaaat 35367581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 35755167 - 35755255
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttctatcacttatttgttact 89  Q
    |||||||||||||||||||  |  ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  35755167 agtaaagatcaagttaattcctctacaattaagggaactataggatatgttcctcctggtaaagttcttttcatcacttatttgttact 35755255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 35755392 - 35755535
Alignment:
Q  208 ccttaattattttgctaatgaattgttgttatttgaatagaatatggagtaggtgttccagtatctccccagggagatgtttacagctttgggattctct 307  Q
    |||||||| ||||  ||| ||||||||||| |||||| ||| ||||||| ||||| ||| ||||| ||  |||||||| ||||||||| |||||||||      
T  35755392 ccttaatttttttcttaaagaattgttgttgtttgaaaagagtatggagcaggtggtccggtatcaccggagggagatatttacagctatgggattctgc 35755491  T
Q  308 tgttagagatgctcaccggaaagagaccaatagataacatgttt 351  Q
    |||| || ||||| |||||||||||||||| |||||||||||||    
T  35755492 tgttggaaatgcttaccggaaagagaccaacagataacatgttt 35755535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 35371099 - 35371192
Alignment:
Q  258 aggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcaccggaaagagaccaatagataacatgttt 351  Q
    ||||||||||||||| || || |||||| | || ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  35371099 aggtgttccagtatcaccacatggagatatctatagctttgggattcttctgttagagatgctcaccggaaagagaccaacagataacatgttt 35371192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 158 - 351
Target Start/End: Original strand, 35425911 - 35426104
Alignment:
Q  158 aatgatttgcttataatcagtatgcatcagtatttgatatatactccaacccttaattattttgctaatgaattgttgttatttgaatagaatatggagt 257  Q
    |||||||| ||| |||||| ||||||| ||||||||||| ||||||||  ||||||||  | | |||| ||||||||||| ||| |||||| ||||||      
T  35425911 aatgattttcttttaatcaatatgcataagtatttgataaatactccattccttaatttctattctaaagaattgttgttgttttaatagagtatggatc 35426010  T
Q  258 aggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcaccggaaagagaccaatagataacatgttt 351  Q
    ||||| |   ||||| || ||||||||| | || |||| ||| ||| |  ||||||||||||| || ||||||||||||| |||||||||||||    
T  35426011 aggtggtatggtatcaccacagggagatatctatagctatggaattgttctgttagagatgcttactggaaagagaccaacagataacatgttt 35426104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 35386583 - 35386699
Alignment:
Q  230 ttgttgttatttgaatagaatatggagtaggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcaccggaaa 329  Q
    |||||||| |||||| ||| || |||| ||||||||||||||| ||  |||||||| | |||||||||||||||||  |  |||||||| ||||||||||    
T  35386583 ttgttgttgtttgaaaagagtacggagaaggtgttccagtatcaccaaagggagatatctacagctttgggattcttctactagagatgttcaccggaaa 35386682  T
Q  330 gagaccaatagataaca 346  Q
    |||||||| | ||||||    
T  35386683 gagaccaacaaataaca 35386699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35376765 - 35376838
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttctat 74  Q
    |||||| ||||||||| ||  | |||||| || ||||||||||||||| |||||||||||||||||||||||||    
T  35376765 agtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctat 35376838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35424024 - 35424097
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttctat 74  Q
    |||||| ||||||||| ||  | |||||| || ||||||||||||||| |||||||||||||||||||||||||    
T  35424024 agtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctat 35424097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35411026 - 35411094
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctt 69  Q
    |||||||||||||||| |||||  ||||| || ||||||||||||||| ||||||||||||||| ||||    
T  35411026 agtaaagatcaagttattttttctacaattaaaggaactataggatatattcctcctggtaaagctctt 35411094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 35411229 - 35411345
Alignment:
Q  230 ttgttgttatttgaatagaatatggagtaggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcaccggaaa 329  Q
    |||||||| |||||| ||| || |||| ||||||||||||||| || | ||||||| | |||||||||||||||||  |  |||||||| |||| | |||    
T  35411229 ttgttgttgtttgaaaagagtacggagaaggtgttccagtatcaccacggggagatatctacagctttgggattcttctactagagatgttcactgcaaa 35411328  T
Q  330 gagaccaatagataaca 346  Q
    |||||||| | ||||||    
T  35411329 gagaccaacaaataaca 35411345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 35377062 - 35377170
Alignment:
Q  268 gtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcaccggaaagagaccaatagataacatgtttagccagaatcttagcc 367  Q
    ||||| || ||||||||| | || |||| ||| |||||  ||||||||||||| || ||||||||||||| ||||||||| ||| |  ||||||| |||     
T  35377062 gtatcaccacagggagatatctatagctatggaattcttctgttagagatgcttactggaaagagaccaacagataacatcttttgtgagaatctaagct 35377161  T
Q  368 ttcacaaat 376  Q
    | |||||||    
T  35377162 tacacaaat 35377170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35386365 - 35386433
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctt 69  Q
    |||||||||||||||| ||  |  || || || ||||||||||||||| ||||||||||||||||||||    
T  35386365 agtaaagatcaagttatttcctctactattaaaggaactataggatatattcctcctggtaaagttctt 35386433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 29622831 - 29622704
Alignment:
Q  249 atatggagtaggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcaccggaaagagaccaatagataacatg 348  Q
    |||||||  ||||||||||||||| || ||||||||| | ||||||||||| |||||  |||||||||||||||| ||||||||||||  ||||||||||    
T  29622831 atatggaacaggtgttccagtatcaccacagggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccagcagataacatg 29622732  T
Q  349 tttagccagaatcttagccttcacaaat 376  Q
    ||| |  ||||| | ||||| |||||||    
T  29622731 ttttgtgagaatttaagcctacacaaat 29622704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29622965 - 29622892
Alignment:
Q  1 agtaaagatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttctatc 75  Q
    ||||| |||||| ||| || || |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  29622965 agtaatgatcaaattacttcttccacaattaagggaactataggatatgttcctcctggt-aagttctttctatc 29622892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 1154273 - 1154352
Alignment:
Q  258 aggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcaccggaaagagaccaa 337  Q
    ||||||||||||||| || ||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  1154273 aggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaa 1154352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 1154061 - 1154105
Alignment:
Q  25 acaatcaagggaactataggatatgttcctcctggtaaagttctt 69  Q
    ||||| || ||||| ||||||||| ||||||||||||||||||||    
T  1154061 acaattaaaggaacaataggatatattcctcctggtaaagttctt 1154105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 30626429 - 30626493
Alignment:
Q  6 agatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttc 71  Q
    ||||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30626429 agatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggt-aagttctttc 30626493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 30663380 - 30663444
Alignment:
Q  6 agatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttc 71  Q
    ||||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30663380 agatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggt-aagttctttc 30663444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 30672060 - 30672124
Alignment:
Q  6 agatcaagttaatttttgcacaatcaagggaactataggatatgttcctcctggtaaagttctttc 71  Q
    ||||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  30672060 agatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggt-aagttctttc 30672124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 15294135 - 15294191
Alignment:
Q  34 ggaactataggatatgttcctcctggtaaagttcttt--ctatcacttatttgttac 88  Q
    ||||||||||||||| |||||||||||||||||||||   | |||||||||||||||    
T  15294135 ggaactataggatatattcctcctggtaaagttcttttcatgtcacttatttgttac 15294191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 15474504 - 15474560
Alignment:
Q  34 ggaactataggatatgttcctcctggtaaagttcttt--ctatcacttatttgttac 88  Q
    ||||||||||||||| |||||||||||||||||||||   | |||||||||||||||    
T  15474504 ggaactataggatatattcctcctggtaaagttcttttcatgtcacttatttgttac 15474560  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 15294360 - 15294421
Alignment:
Q  289 tacagctttgggattctcttgttagagatgctcaccggaaagagaccaatagataacatgtt 350  Q
    ||||||| |||||||||  |||| || |||||||||||||||||||||| | ||| ||||||    
T  15294360 tacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgtt 15294421  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 15474729 - 15474790
Alignment:
Q  289 tacagctttgggattctcttgttagagatgctcaccggaaagagaccaatagataacatgtt 350  Q
    ||||||| |||||||||  |||| || |||||||||||||||||||||| | ||| ||||||    
T  15474729 tacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgtt 15474790  T

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