View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_high_3 (Length: 476)
Name: NF8595_high_3
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 5551984 - 5551756
Alignment:
| Q |
13 |
attatactcattcctctaaaaataattgaatttcactattgtcttgtgttgaaatctatgtttctcttcataaaaagtaaataagtattactacnnnnnn |
112 |
Q |
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| T |
5551984 |
attatactcattcctctaaacataattgaatttcactattgtcttgtgttgaaatctatgtttctcttcataaaaagtaaataagtattactacaaaaaa |
5551885 |
T |
|
| Q |
113 |
nnnntattttaaggatagccaaaaactttaaataatcacttcaaaaatttgcttctttgcaacattcaagccgatgacaaataattttannnnnnnnaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
5551884 |
aaa--attttaaggatagccaaaaactttaaataatcacttcaaaaatttgcttctttgcaacattcaagccgatgaaaaataattttattttttttaaa |
5551787 |
T |
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| Q |
213 |
caagtcaaaatagaatatattaccaacaaaa |
243 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5551786 |
caagtcaaaatagaatatattaccaacaaaa |
5551756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 239 - 457
Target Start/End: Complemental strand, 5551621 - 5551402
Alignment:
| Q |
239 |
caaaaaattatttcatagtagatagttaggtttcttaaatcttaatgatgttgtgaacaaaaaatagagnnnnnnntatatgcataagaagcttggttaa |
338 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5551621 |
caaaaacttatttcatagtagatagttaggtttcttaaatcttaatgatgctgtgaacaaaaaatagagagaaaaatatatgcataagaagcttggttaa |
5551522 |
T |
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| Q |
339 |
attgacaaaaatataatagatagttttac-nnnnnnnnnnggttactgatggttttactttttaagggaatggtataaattttaagataaataaaaaata |
437 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5551521 |
attgacaaaaatataatagatagttttactttttttttttggttactgatggttttactttttaagggaatggtataaattttaagataaataaaaaata |
5551422 |
T |
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| Q |
438 |
agtgtaatttaagggagaag |
457 |
Q |
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|||||||||||||||||||| |
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| T |
5551421 |
agtgtaatttaagggagaag |
5551402 |
T |
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