View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_high_5 (Length: 317)
Name: NF8595_high_5
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 114 - 300
Target Start/End: Original strand, 10181448 - 10181639
Alignment:
| Q |
114 |
acaatcaatataatgtggctaatgcatagacnnnnnnntgattaaatatgtattcatactag--taaagtattcctgctagagtaaacgattatcttttt |
211 |
Q |
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| T |
10181448 |
acaatcaatataatgtggctaatgcatagacaaaaaa-tgattaaatatgtattcctactagagtaaagtattcctgctagagtaaatgattatcttttt |
10181546 |
T |
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| Q |
212 |
aatgtg----tttgaagttaaagctcagcaattttatgtctaaatattttggatggttaggttgtagtataaagtggtcaagtgtcgaacaca |
300 |
Q |
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| T |
10181547 |
aatgtggttatttgaagttaaagctcagcaattttatgtctaaatattttggatggttatgttgtagtatacagtggtcaagtgtcgaacaca |
10181639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10181393 - 10181436
Alignment:
| Q |
1 |
atgggttcaagacacatagcgttttgatcctcatttcattaact |
44 |
Q |
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| T |
10181393 |
atgggttcaagacacatagcgttttgatcctcatttcattaact |
10181436 |
T |
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