View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8595_high_6 (Length: 309)
Name: NF8595_high_6
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8595_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45313725 - 45313435
Alignment:
| Q |
1 |
cagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttagctttcatccattggtgccaaaagaaaccccttcgagtaa |
100 |
Q |
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| T |
45313725 |
cagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttagttttcatccattggtgccaaaagaaaccccttcgagtaa |
45313626 |
T |
|
| Q |
101 |
gaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcctatctagaagcacagttaataacctgactcgggcatcatgaaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313625 |
gaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcctatctagaagcacagttaataacctgactcgggcatcatgaaaaag |
45313526 |
T |
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| Q |
201 |
gtacaagtttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttaccagaacaggattgatagaaccca |
291 |
Q |
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| T |
45313525 |
gtataagtttaattctgtagacttcattcaaaaggataaataagttagggattaagctttccttttaccagaacaggattgatagaaccca |
45313435 |
T |
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Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 27759400 - 27759114
Alignment:
| Q |
1 |
cagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttagctttcatccattggtgccaaaagaaaccccttcgagtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27759400 |
cagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagtg----ttcatccattggtgccaaaagaaaccccttcgagtaa |
27759305 |
T |
|
| Q |
101 |
gaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcctatctagaagcacagttaataacctgactcgggcatcatgaaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27759304 |
gaaactataacatggtgagacataccgttctccgtgaagttctttccacaagcctatctagaagcacagttaataacctgactcgggcatcatgaaaaag |
27759205 |
T |
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| Q |
201 |
gtacaagtttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttaccagaacaggattgatagaaccca |
291 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27759204 |
gtataagcttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttaccagaacaggattgatagaaccca |
27759114 |
T |
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