View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8595_high_9 (Length: 247)

Name: NF8595_high_9
Description: NF8595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8595_high_9
NF8595_high_9
[»] chr3 (21 HSPs)
chr3 (1-241)||(9343861-9344101)
chr3 (1-241)||(9448330-9448570)
chr3 (141-241)||(41985644-41985744)
chr3 (141-240)||(9695616-9695715)
chr3 (141-234)||(41980877-41980970)
chr3 (139-241)||(9494806-9494908)
chr3 (141-241)||(9336556-9336656)
chr3 (149-241)||(9352917-9353009)
chr3 (135-237)||(9395279-9395381)
chr3 (141-241)||(9329852-9329952)
chr3 (141-181)||(9485969-9486009)
chr3 (149-185)||(9613925-9613961)
chr3 (141-220)||(13864241-13864320)
chr3 (159-241)||(9617481-9617563)
chr3 (156-185)||(9340743-9340772)
chr3 (156-185)||(9348059-9348088)
chr3 (149-182)||(9348101-9348134)
chr3 (156-185)||(9369713-9369742)
chr3 (159-240)||(9655375-9655456)
chr3 (155-214)||(9432939-9432998)
chr3 (133-185)||(9686755-9686807)
[»] chr6 (9 HSPs)
chr6 (2-220)||(9170854-9171066)
chr6 (134-241)||(7046855-7046962)
chr6 (2-220)||(9159362-9159574)
chr6 (141-239)||(7041514-7041612)
chr6 (135-220)||(7025793-7025878)
chr6 (135-220)||(7029850-7029935)
chr6 (141-220)||(7012857-7012936)
chr6 (7-71)||(7013015-7013079)
chr6 (7-82)||(7025940-7026015)
[»] chr8 (2 HSPs)
chr8 (32-244)||(44688676-44688888)
chr8 (41-99)||(13170584-13170642)
[»] chr1 (7 HSPs)
chr1 (146-220)||(235250-235324)
chr1 (45-101)||(4428784-4428840)
chr1 (147-220)||(8814368-8814441)
chr1 (133-220)||(251386-251473)
chr1 (46-105)||(4440012-4440071)
chr1 (194-241)||(18991220-18991267)
chr1 (143-220)||(231618-231695)
[»] chr2 (1 HSPs)
chr2 (144-241)||(20694304-20694401)
[»] chr5 (2 HSPs)
chr5 (14-216)||(33541693-33541895)
chr5 (135-203)||(18571165-18571233)
[»] chr7 (1 HSPs)
chr7 (141-185)||(450111-450155)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9344101 - 9343861
Alignment:
Q  1 ctcgaatgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgag 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9344101 ctcgaatgtccacttagttattgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgag 9344002  T
Q  101 tgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttagggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  9344001 tgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttagggg 9343902  T
Q  201 atagtgttttgttcttggggaatgaatgttcgttctctgct 241  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  9343901 atagtgttttgttcttggggaatgaatgttcgttttctgct 9343861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9448570 - 9448330
Alignment:
Q  1 ctcgaatgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgag 100  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  9448570 ctcgaatgtccacttagttgctgaacctttgattgatggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgag 9448471  T
Q  101 tgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttagggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||    
T  9448470 tgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttagggg 9448371  T
Q  201 atagtgttttgttcttggggaatgaatgttcgttctctgct 241  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  9448370 atagtgttttgttcttggggaatgactgttcgttttctgct 9448330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 41985744 - 41985644
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctgc 240  Q
    |||||||||| |  |||||||||||||||||||| ||||| ||||   | | |||||||||||| ||||||||||||||||||| ||||||||| |||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  241 t 241  Q
    |    
T  41985644 t 41985644  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 9695616 - 9695715
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctgc 240  Q
    ||||||| || | ||||||||||||||||||||||||||| ||||  || | |||||||||||| |||||||| |||||| | || ||||||||||||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 41980970 - 41980877
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgtt 234  Q
    |||||||||||| ||||| | |||| |||||||| ||||| ||||  || | |||||||||||| ||||||||||||||||||| |||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 9494806 - 9494908
Alignment:
Q  139 ggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctct 238  Q
    |||| ||||| ||| ||||||||||||||||| ||  |||||||| |  |  | |||||||||||| ||||||||||||||||||| ||||||||| |||    
T  9494806 ggttaatgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttct 9494905  T
Q  239 gct 241  Q
    |||    
T  9494906 gct 9494908  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 9336656 - 9336556
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctgc 240  Q
    |||||||||||| |||||||||||| ||||| | |||||| |||   || | |||||| ||||  ||||||||||||||||||| ||||||||| |||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  241 t 241  Q
    |    
T  9336556 t 9336556  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 9353009 - 9352917
Alignment:
Q  149 tttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctgct 241  Q
    |||||||||||||||| ||||||||||||||||||||  | ||  ||||||| ||| ||||||||  |||||| || ||||||||| ||||||    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgct 9352917  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 9395381 - 9395279
Alignment:
Q  135 taagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgtt 234  Q
    ||||| |||||||||||| ||||||||||||| |||| |||||||||||||  || | |||||| |||   ||||||||||||| || ||| | ||||||    
T  9395381 taaggattgatgtgtttaggcttgatgagaagcagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttggagagtgattattcgtt 9395282  T
Q  235 ctc 237  Q
    |||    
T  9395281 ctc 9395279  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 9329952 - 9329852
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctgc 240  Q
    |||||||||||| |||||||||||| ||||| | |||||| ||||   | | |||||| ||||  ||||||||||||||||||| || |||||| |||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  241 t 241  Q
    |    
T  9329852 t 9329852  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 9485969 - 9486009
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtg 181  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtg 9486009  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 9613925 - 9613961
Alignment:
Q  149 tttaagcttgatgagaaggagaagaagtgggtgaagt 185  Q
    |||||||||||||||||||||||||||||||||||||    
T  9613925 tttaagcttgatgagaaggagaagaagtgggtgaagt 9613961  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 13864320 - 13864241
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 220  Q
    |||||||||||| ||||||||||| |||||| ||||||||| ||   | || ||| |||||||| |||||||| ||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggg 13864241  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 9617481 - 9617563
Alignment:
Q  159 atgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctgct 241  Q
    ||||||| |||||||| ||||||||||  | || |||||||||||| ||||||||| | | ||||| |||||| || ||||||    
T  9617481 atgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgct 9617563  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 9340772 - 9340743
Alignment:
Q  156 ttgatgagaaggagaagaagtgggtgaagt 185  Q
    ||||||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagt 9340743  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 9348088 - 9348059
Alignment:
Q  156 ttgatgagaaggagaagaagtgggtgaagt 185  Q
    ||||||||||||||||||||||||||||||    
T  9348088 ttgatgagaaggagaagaagtgggtgaagt 9348059  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 9348134 - 9348101
Alignment:
Q  149 tttaagcttgatgagaaggagaagaagtgggtga 182  Q
    ||||| ||||||||||||||||||||||||||||    
T  9348134 tttaaacttgatgagaaggagaagaagtgggtga 9348101  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 9369742 - 9369713
Alignment:
Q  156 ttgatgagaaggagaagaagtgggtgaagt 185  Q
    ||||||||||||||||||||||||||||||    
T  9369742 ttgatgagaaggagaagaagtgggtgaagt 9369713  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 9655375 - 9655456
Alignment:
Q  159 atgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctgc 240  Q
    |||||||||||||||| ||||||||||  |  | |||||||||||| |||||||| |||||  | | ||||||||| |||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgc 9655456  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 9432998 - 9432939
Alignment:
Q  155 cttgatgagaaggagaagaagtgggtgaag-tcaacaactttaggggatagtgttttgttc 214  Q
    |||||||||||||||| ||||||||||||| |||| || |||||| ||||| |||||||||    
T  9432998 cttgatgagaaggagaggaagtgggtgaagatcaagaa-tttaggagatagggttttgttc 9432939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 9686807 - 9686755
Alignment:
Q  133 tataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagt 185  Q
    ||||||| ||||||| || | |||||||||||| |||||||||||||| ||||    
T  9686807 tataaggtttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagt 9686755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 9171066 - 9170854
Alignment:
Q  2 tcgaatgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagt 101  Q
    |||| |||||| |||||||||||||||||||||||||| ||| |||  ||||||||||| ||||| |||||||| |||||| ||| |||| ||||||| |    
T  9171066 tcgagtgtccatttagttgctgaacctttggttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgttagcggacgtttatgatt 9170967  T
Q  102 gtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttagggga 201  Q
    || ||||| | ||  |      |  |||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||| | ||| | |||||||||    
T  9170966 gtctttgtattgatct------taatgatcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttagggga 9170873  T
Q  202 tagtgttttgttcttgggg 220  Q
    ||| |||||||||||||||    
T  9170872 tagggttttgttcttgggg 9170854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 7046962 - 7046855
Alignment:
Q  134 ataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgt 233  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||  ||||||||||||||||   |||||||||    
T  7046962 ataagtgttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgt 7046863  T
Q  234 tctctgct 241  Q
    | ||||||    
T  7046862 tttctgct 7046855  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 9159362 - 9159574
Alignment:
Q  2 tcgaatgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagt 101  Q
    |||| |||||| ||||| |||||||||||||||||||| ||| ||| |||||||||||| ||||| |||||||| |||||| ||  |||   |||||| |    
T  9159362 tcgagtgtccatttagtggctgaacctttggttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgttatcggaggcttatgatt 9159461  T
Q  102 gtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttagggga 201  Q
    || || || | ||  |      |  |||| || ||||| ||||| ||||||||||| | ||||||||||||||||||||||| | ||| | |||||||||    
T  9159462 gtcttagtattgatct------taatgatcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttagggga 9159555  T
Q  202 tagtgttttgttcttgggg 220  Q
    ||| |||||||||||||||    
T  9159556 tagggttttgttcttgggg 9159574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 7041612 - 7041514
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctg 239  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||  || | |||||||||||| ||||||||||||||  | | ||||||||||||||    
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctg 7041514  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 7025878 - 7025793
Alignment:
Q  135 taagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 220  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||||||  || | |||||| ||||| |||||||||||||||    
T  7025878 taaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 7029935 - 7029850
Alignment:
Q  135 taagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 220  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||||||  || | ||| |||||||| |||||||||||||||    
T  7029935 taaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 7012936 - 7012857
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 220  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||  |||| |||||| |||||  ||||||||||||||    
T  7012936 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 7013079 - 7013015
Alignment:
Q  7 tgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagg 71  Q
    |||||| ||||| ||||||||||||||||||||||||||||  ||||||||||| ||||| ||||    
T  7013079 tgtccaattagtggctgaacctttggttggtggcggggacatgaaattcttagtggagagcgagg 7013015  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 7026015 - 7025940
Alignment:
Q  7 tgtccacttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttg 82  Q
    |||||| ||||| |||||||||||| |||| ||||||||||  ||||||||||| ||||| ||||| || ||||||    
T  7026015 tgtccaattagtggctgaacctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttg 7025940  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 44688676 - 44688888
Alignment:
Q  32 gttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatg 131  Q
    |||| ||| ||||||| ||||||| | || ||||| || || |||||||||||||||||||| ||||| | |  | |||| | ||||||||||   ||||    
T  44688676 gttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatg 44688775  T
Q  132 ctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttc 231  Q
     | || || |||||||||| | |||  |||||||| | ||||| ||||| |||| ||| | ||||||| ||||  ||||||||||||||||||||| |||    
T  44688776 gtctacggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattc 44688875  T
Q  232 gttctctgctact 244  Q
     || ||| |||||    
T  44688876 attttctactact 44688888  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 13170584 - 13170642
Alignment:
Q  41 ggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatga 99  Q
    |||||||  |||||||| |||||||| ||||| |||||||||||||||||||| |||||    
T  13170584 ggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatga 13170642  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 235324 - 235250
Alignment:
Q  146 gtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 220  Q
    |||||||||||| |||| ||||||||||||||||||||||   ||| |||||||||||| ||||| |||||||||    
T  235324 gtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttgggg 235250  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 4428840 - 4428784
Alignment:
Q  45 acaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagt 101  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||    
T  4428840 acaaaaaattcttagtggagagtgagggcaagttgttgctagtggtcatttatgagt 4428784  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 8814368 - 8814441
Alignment:
Q  147 tgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 220  Q
    ||||||||||| | || ||||||||||||||||||||||   | | |||||||||||| |||||||| ||||||    
T  8814368 tgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttgggg 8814441  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 251386 - 251473
Alignment:
Q  133 tataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 220  Q
    ||||||| || | |||||||||||| |||| ||||| ||||||||||| ||||   | | | |||||||||| |||||||||||||||    
T  251386 tataaggattaacgtgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttgggg 251473  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 4440071 - 4440012
Alignment:
Q  46 caaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagtgttt 105  Q
    ||||||||||||||| ||||| ||||| | |||| ||| ||||||||| |||||||||||    
T  4440071 caaaaaattcttagtggagagtgagggtgcgttgctgcgagtggacatctatgagtgttt 4440012  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 18991267 - 18991220
Alignment:
Q  194 ttaggggatagtgttttgttcttggggaatgaatgttcgttctctgct 241  Q
    |||||| |||| ||||||||||||||||||| ||||||||| ||||||    
T  18991267 ttagggaatagggttttgttcttggggaatggatgttcgttttctgct 18991220  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 231695 - 231618
Alignment:
Q  143 gatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 220  Q
    ||||||||||||||  |||  ||||||| ||||||||||||||   | | |||||||||||  |||||||||||||||    
T  231695 gatgtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttgggg 231618  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 20694304 - 20694401
Alignment:
Q  144 atgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttctctgct 241  Q
    ||||||| | ||||||||| ||||||||||| |||||||  |  |||| ||| |||||||| |||||||| |||||||||| ||||||||| ||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgct 20694401  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 33541895 - 33541693
Alignment:
Q  14 ttagttgctgaacctttggttggtggcggggacaaaaaattcttagtcgagagagagggagagttgttgctagtggacatttatgagtgtttttgtttcg 113  Q
    ||||| |||||| ||||||||||||| || |||   ||||||||||| |||||  |||| || |||||| |||||||  ||||||| |||    || |||    
T  33541895 ttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatgattgtacacgtatcg 33541796  T
Q  114 agttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggatagtgttttgtt 213  Q
      ||||| ||||   || || ||||| || || ||||||||||| |||||||||||| | |||||||||||| ||  | |||||| |||| |||||||||    
T  33541795 gcttccctggtcacaatcctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgtt 33541696  T
Q  214 ctt 216  Q
    |||    
T  33541695 ctt 33541693  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 18571233 - 18571165
Alignment:
Q  135 taagggttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagtcaacaactttaggggata 203  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||| |  || | |||||||||||    
T  18571233 taaggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggata 18571165  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 450111 - 450155
Alignment:
Q  141 ttgatgtgtttaagcttgatgagaaggagaagaagtgggtgaagt 185  Q
    |||||||||||| |||||||||||||||||| |||||||| ||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagt 450155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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